RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 S4R3F8 94 aa2.08□□□□□ -2.08
CCDC39-202ENST00000471307 CHKB-CPT1BH3BT56 60 aa2.07□□□□□ -2.08
CCDC39-202ENST00000471307 SPTSSBQ8NFR3 76 aa2.07□□□□□ -2.08
CCDC39-202ENST00000471307 CSAG1Q6PB30 78 aa2.06□□□□□ -2.08
CCDC39-202ENST00000471307 SERP1Q9Y6X1 66 aa2.06□□□□□ -2.08
CCDC39-202ENST00000471307 FAT4Q6V0I7 4981 aa2.06□□□□□ -2.08
CCDC39-202ENST00000471307 MT1HP80294 61 aa2.05□□□□□ -2.08
CCDC39-202ENST00000471307 M0R2T5 61 aa2.04□□□□□ -2.08
CCDC39-202ENST00000471307 MIR22HGQ0VDD5 57 aa2.04□□□□□ -2.08
CCDC39-202ENST00000471307 KRTAP13-4Q3LI77 160 aa2.04□□□□□ -2.08
CCDC39-202ENST00000471307 CDC42SE1Q9NRR8 79 aa2.02□□□□□ -2.09
CCDC39-202ENST00000471307 FCGBPQ9Y6R7 5405 aaPredicted RBP2.01□□□□□ -2.09
CCDC39-202ENST00000471307 H0YAA0 97 aa2.01□□□□□ -2.09
CCDC39-202ENST00000471307 LINC01558Q9Y6Z2 57 aa1.98□□□□□ -2.09
CCDC39-202ENST00000471307 A0A1B0GU69 56 aa1.97□□□□□ -2.09
CCDC39-202ENST00000471307 PRR15LQ9BU68 103 aa1.97□□□□□ -2.09
CCDC39-202ENST00000471307 A6NN06 94 aa1.96□□□□□ -2.1
CCDC39-202ENST00000471307 CRIPTQ9P021 101 aa1.96□□□□□ -2.1
CCDC39-202ENST00000471307 INE1O15225 51 aa1.95□□□□□ -2.1
CCDC39-202ENST00000471307 MT2AP02795 61 aa1.95□□□□□ -2.1
CCDC39-202ENST00000471307 M0QZ58 72 aa1.93□□□□□ -2.1
CCDC39-202ENST00000471307 MT1FP04733 61 aa1.93□□□□□ -2.1
CCDC39-202ENST00000471307 UQCR11O14957 56 aa1.91□□□□□ -2.1
CCDC39-202ENST00000471307 Q5VV11 94 aa1.9□□□□□ -2.11
CCDC39-202ENST00000471307 SPRR2GQ9BYE4 73 aa1.9□□□□□ -2.11
CCDC39-202ENST00000471307 SPATA8Q6RVD6 105 aa1.88□□□□□ -2.11
CCDC39-202ENST00000471307 KRTAP19-8Q3LI54 63 aa1.86□□□□□ -2.11
CCDC39-202ENST00000471307 KRTAP12-1P59990 96 aa1.85□□□□□ -2.11
CCDC39-202ENST00000471307 A0A0D9SG42 100 aa1.84□□□□□ -2.11
CCDC39-202ENST00000471307 PLAC4Q8WY50 150 aa1.84□□□□□ -2.11
CCDC39-202ENST00000471307 USH2AO75445 5202 aa1.82□□□□□ -2.12
CCDC39-202ENST00000471307 MT1BP07438 61 aa1.82□□□□□ -2.12
CCDC39-202ENST00000471307 KRTAP19-6Q3LI70 58 aa1.77□□□□□ -2.13
CCDC39-202ENST00000471307 SSPOA2VEC9 5147 aa1.75□□□□□ -2.13
CCDC39-202ENST00000471307 MT1XP80297 61 aa1.75□□□□□ -2.13
CCDC39-202ENST00000471307 FSIP2Q5CZC0 6907 aa1.75□□□□□ -2.13
CCDC39-202ENST00000471307 C10orf95Q9H7T3 257 aa1.72□□□□□ -2.13
CCDC39-202ENST00000471307 TNP1P09430 55 aa1.7□□□□□ -2.14
CCDC39-202ENST00000471307 KRTAP8-1Q8IUC2 63 aa1.61□□□□□ -2.15
CCDC39-202ENST00000471307 KMT2DO14686 5537 aa1.61□□□□□ -2.15
CCDC39-202ENST00000471307 KRTAP19-5Q3LI72 72 aa1.57□□□□□ -2.16
CCDC39-202ENST00000471307 KRTAP19-7Q3SYF9 63 aa1.56□□□□□ -2.16
CCDC39-202ENST00000471307 MACF1Q9UPN3 7388 aaKnown RBP1.56□□□□□ -2.16
CCDC39-202ENST00000471307 SYNE2Q8WXH0 6885 aaKnown RBP1.55□□□□□ -2.16
CCDC39-202ENST00000471307 SPRR2FQ96RM1 72 aa1.55□□□□□ -2.16
CCDC39-202ENST00000471307 MT1EP04732 61 aa1.54□□□□□ -2.16
CCDC39-202ENST00000471307 MUC12Q9UKN1 5478 aa1.52□□□□□ -2.17
CCDC39-202ENST00000471307 MDN1Q9NU22 5596 aa1.5□□□□□ -2.17
CCDC39-202ENST00000471307 MT1GP13640 62 aa1.5□□□□□ -2.17
CCDC39-202ENST00000471307 KRTAP19-3Q7Z4W3 81 aa1.5□□□□□ -2.17
CCDC39-202ENST00000471307 MT1LQ93083 61 aa1.5□□□□□ -2.17
CCDC39-202ENST00000471307 SPRR2EP22531 72 aa1.49□□□□□ -2.17
CCDC39-202ENST00000471307 SPRR2BP35325 72 aa1.49□□□□□ -2.17
CCDC39-202ENST00000471307 SPRR2AP35326 72 aa1.49□□□□□ -2.17
CCDC39-202ENST00000471307 MT1MQ8N339 61 aa1.45□□□□□ -2.18
CCDC39-202ENST00000471307 SPRR2DP22532 72 aa1.44□□□□□ -2.18
CCDC39-202ENST00000471307 NEBP20929 6669 aa1.43□□□□□ -2.18
CCDC39-202ENST00000471307 KRTAP2-3P0C7H8 128 aa1.4□□□□□ -2.19
CCDC39-202ENST00000471307 KRTAP2-4Q9BYR9 128 aa1.4□□□□□ -2.19
CCDC39-202ENST00000471307 KRTAP20-1Q3LI63 56 aa1.37□□□□□ -2.19
CCDC39-202ENST00000471307 KRTAP2-1Q9BYU5 128 aa1.36□□□□□ -2.19
CCDC39-202ENST00000471307 DSTQ03001 7570 aaKnown RBP1.34□□□□□ -2.19
CCDC39-202ENST00000471307 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.19
CCDC39-202ENST00000471307 MT1AP04731 61 aa1.28□□□□□ -2.2
CCDC39-202ENST00000471307 MUC16Q8WXI7 14507 aa1.26□□□□□ -2.21
CCDC39-202ENST00000471307 KRTAP6-1Q3LI64 71 aa1.26□□□□□ -2.21
CCDC39-202ENST00000471307 MT4P47944 62 aa1.24□□□□□ -2.21
CCDC39-202ENST00000471307 SYNE1Q8NF91 8797 aaKnown RBP1.2□□□□□ -2.22
CCDC39-202ENST00000471307 KRTAP20-2Q3LI61 65 aa1.2□□□□□ -2.22
CCDC39-202ENST00000471307 KRTAP6-2Q3LI66 62 aa1.17□□□□□ -2.22
CCDC39-202ENST00000471307 GPR98Q8WXG9 6306 aa1.12□□□□□ -2.23
CCDC39-202ENST00000471307 AHNAK2Q8IVF2 5795 aa1.1□□□□□ -2.23
CCDC39-202ENST00000471307 MUC5ACP98088 5654 aa0.97□□□□□ -2.25
CCDC39-202ENST00000471307 AHNAKQ09666 5890 aaKnown RBP0.9□□□□□ -2.27
CCDC39-202ENST00000471307 MUC5BQ9HC84 5762 aaPredicted RBP0.89□□□□□ -2.27
CCDC39-202ENST00000471307 PRM1P04553 51 aa0.87□□□□□ -2.27
CCDC39-202ENST00000471307 PHGR1C9JFL3 82 aa0.73□□□□□ -2.29
CCDC39-202ENST00000471307 KRTAP21-1Q3LI58 79 aa0.64□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 40 ms