RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 KRTAP4-7Q9BYR0 210 aa6.31□□□□□ -1.4
SMC4-211ENST00000469858 KRTAP19-4Q3LI73 84 aa6.3□□□□□ -1.4
SMC4-211ENST00000469858 LOC100996750A0A140TA64 210 aa6.29□□□□□ -1.4
SMC4-211ENST00000469858 KRTAP19-3Q7Z4W3 81 aa6.29□□□□□ -1.4
SMC4-211ENST00000469858 KRTAP4-6Q9BYQ5 205 aa6.29□□□□□ -1.4
SMC4-211ENST00000469858 NDUFAF8A1L188 74 aa6.26□□□□□ -1.41
SMC4-211ENST00000469858 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.26□□□□□ -1.41
SMC4-211ENST00000469858 KRTAP5-9P26371 169 aa6.26□□□□□ -1.41
SMC4-211ENST00000469858 MT1GP13640 62 aa6.22□□□□□ -1.41
SMC4-211ENST00000469858 MT1MQ8N339 61 aa6.18□□□□□ -1.42
SMC4-211ENST00000469858 LCE5AQ5TCM9 118 aa6.16□□□□□ -1.42
SMC4-211ENST00000469858 H3BS24 57 aa6.11□□□□□ -1.43
SMC4-211ENST00000469858 KRTAP4-3Q9BYR4 195 aa6.11□□□□□ -1.43
SMC4-211ENST00000469858 KRTAP6-3Q3LI67 103 aa6.1□□□□□ -1.43
SMC4-211ENST00000469858 MDN1Q9NU22 5596 aa6.09□□□□□ -1.43
SMC4-211ENST00000469858 KRTAP9-6A8MVA2 160 aa6.09□□□□□ -1.43
SMC4-211ENST00000469858 LCE1AQ5T7P2 110 aa6.09□□□□□ -1.43
SMC4-211ENST00000469858 SPRR2EP22531 72 aa6.06□□□□□ -1.44
SMC4-211ENST00000469858 SPRR2BP35325 72 aa6.06□□□□□ -1.44
SMC4-211ENST00000469858 SPRR2AP35326 72 aa6.06□□□□□ -1.44
SMC4-211ENST00000469858 DSTQ03001 7570 aaKnown RBP5.9□□□□□ -1.46
SMC4-211ENST00000469858 KRTAP9-7A8MTY7 169 aa5.89□□□□□ -1.47
SMC4-211ENST00000469858 SPRR2DP22532 72 aa5.82□□□□□ -1.48
SMC4-211ENST00000469858 NEBP20929 6669 aa5.68□□□□□ -1.5
SMC4-211ENST00000469858 KRTAP2-3P0C7H8 128 aa5.61□□□□□ -1.51
SMC4-211ENST00000469858 KRTAP2-4Q9BYR9 128 aa5.61□□□□□ -1.51
SMC4-211ENST00000469858 KRTAP2-1Q9BYU5 128 aa5.61□□□□□ -1.51
SMC4-211ENST00000469858 LCE3BQ5TA77 95 aa5.58□□□□□ -1.52
SMC4-211ENST00000469858 KRTAP5-5Q701N2 237 aaPredicted RBP5.54□□□□□ -1.52
SMC4-211ENST00000469858 A0A0A0MQY5 61 aa5.47□□□□□ -1.53
SMC4-211ENST00000469858 MT1AP04731 61 aa5.46□□□□□ -1.54
SMC4-211ENST00000469858 KRTAP6-1Q3LI64 71 aa5.44□□□□□ -1.54
SMC4-211ENST00000469858 SYNE1Q8NF91 8797 aaKnown RBP5.31□□□□□ -1.56
SMC4-211ENST00000469858 KRTAP5-4Q6L8H1 288 aa5.24□□□□□ -1.57
SMC4-211ENST00000469858 KRTAP20-1Q3LI63 56 aa5.22□□□□□ -1.57
SMC4-211ENST00000469858 KRTAP2-2Q9BYT5 123 aa5.22□□□□□ -1.57
SMC4-211ENST00000469858 KRTAP9-4Q9BYQ2 154 aa5.18□□□□□ -1.58
SMC4-211ENST00000469858 KRTAP12-4P60329 112 aa5.13□□□□□ -1.59
SMC4-211ENST00000469858 LCE4AQ5TA78 99 aa5.12□□□□□ -1.59
SMC4-211ENST00000469858 INE1O15225 51 aa5.09□□□□□ -1.6
SMC4-211ENST00000469858 MT4P47944 62 aa5.09□□□□□ -1.6
SMC4-211ENST00000469858 KRTAP5-3Q6L8H2 238 aa5.09□□□□□ -1.6
SMC4-211ENST00000469858 KRTAP4-9Q9BYQ8 210 aa5.06□□□□□ -1.6
SMC4-211ENST00000469858 KRTAP6-2Q3LI66 62 aa5□□□□□ -1.61
SMC4-211ENST00000469858 LCE1DQ5T752 114 aa4.96□□□□□ -1.62
SMC4-211ENST00000469858 MT3P25713 68 aa4.94□□□□□ -1.62
SMC4-211ENST00000469858 KRTAP20-2Q3LI61 65 aa4.93□□□□□ -1.62
SMC4-211ENST00000469858 KRTAP9-9Q9BYP9 154 aa4.89□□□□□ -1.63
SMC4-211ENST00000469858 HMCN1Q96RW7 5635 aa4.88□□□□□ -1.63
SMC4-211ENST00000469858 LCE3DQ9BYE3 92 aa4.82□□□□□ -1.64
SMC4-211ENST00000469858 KRTAP4-2Q9BYR5 136 aa4.78□□□□□ -1.64
SMC4-211ENST00000469858 KRTAP5-2Q701N4 177 aa4.77□□□□□ -1.65
SMC4-211ENST00000469858 LCE3EQ5T5B0 92 aa4.69□□□□□ -1.66
SMC4-211ENST00000469858 OBSCNQ5VST9 7968 aa4.64□□□□□ -1.67
SMC4-211ENST00000469858 KRTAP4-12Q9BQ66 201 aa4.62□□□□□ -1.67
SMC4-211ENST00000469858 KRTAP4-11Q9BYQ6 195 aa4.32□□□□□ -1.72
SMC4-211ENST00000469858 AHNAK2Q8IVF2 5795 aa4.28□□□□□ -1.72
SMC4-211ENST00000469858 LCE1EQ5T753 118 aa4.24□□□□□ -1.73
SMC4-211ENST00000469858 PRM1P04553 51 aa4.16□□□□□ -1.74
SMC4-211ENST00000469858 KRTAP5-1Q6L8H4 278 aa4.13□□□□□ -1.75
SMC4-211ENST00000469858 KRTAP5-8O75690 187 aa4.08□□□□□ -1.76
SMC4-211ENST00000469858 LCE1BQ5T7P3 118 aa4.07□□□□□ -1.76
SMC4-211ENST00000469858 KRTAP5-10Q6L8G5 202 aa4.03□□□□□ -1.76
SMC4-211ENST00000469858 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
SMC4-211ENST00000469858 LCE1CQ5T751 118 aa3.96□□□□□ -1.77
SMC4-211ENST00000469858 KRTAP5-7Q6L8G8 165 aa3.93□□□□□ -1.78
SMC4-211ENST00000469858 GPR98Q8WXG9 6306 aa3.76□□□□□ -1.81
SMC4-211ENST00000469858 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.7□□□□□ -1.82
SMC4-211ENST00000469858 KRTAP21-2Q3LI59 83 aa3.54□□□□□ -1.84
SMC4-211ENST00000469858 MUC5BQ9HC84 5762 aaPredicted RBP3.51□□□□□ -1.85
SMC4-211ENST00000469858 KRTAP5-11Q6L8G4 156 aa3.49□□□□□ -1.85
SMC4-211ENST00000469858 KRTAP4-4Q9BYR3 166 aa3.2□□□□□ -1.9
SMC4-211ENST00000469858 AHNAKQ09666 5890 aaKnown RBP3.15□□□□□ -1.9
SMC4-211ENST00000469858 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
SMC4-211ENST00000469858 PHGR1C9JFL3 82 aa3.01□□□□□ -1.93
SMC4-211ENST00000469858 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
SMC4-211ENST00000469858 KRTAP21-1Q3LI58 79 aa2.52□□□□□ -2.01
SMC4-211ENST00000469858 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 12.5 ms