RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 KRTAP4-11Q9BYQ6 195 aa5.96□□□□□ -1.46
CCDC28B-204ENST00000469003 RPS28P62857 69 aaKnown RBP5.95□□□□□ -1.46
CCDC28B-204ENST00000469003 A0A0A0MQY5 61 aa5.94□□□□□ -1.46
CCDC28B-204ENST00000469003 H7BZZ5 65 aa5.94□□□□□ -1.46
CCDC28B-204ENST00000469003 CCDC179H3BU77 68 aa5.93□□□□□ -1.46
CCDC28B-204ENST00000469003 KRTAP5-10Q6L8G5 202 aa5.92□□□□□ -1.46
CCDC28B-204ENST00000469003 SMIM26A0A096LP01 95 aa5.91□□□□□ -1.46
CCDC28B-204ENST00000469003 LCE4AQ5TA78 99 aa5.9□□□□□ -1.46
CCDC28B-204ENST00000469003 MT1MQ8N339 61 aa5.9□□□□□ -1.46
CCDC28B-204ENST00000469003 MT1LQ93083 61 aa5.89□□□□□ -1.47
CCDC28B-204ENST00000469003 A0A1B0GU69 56 aa5.88□□□□□ -1.47
CCDC28B-204ENST00000469003 A8MU10 97 aa5.84□□□□□ -1.47
CCDC28B-204ENST00000469003 LCE3AQ5TA76 89 aa5.82□□□□□ -1.48
CCDC28B-204ENST00000469003 KRTAP19-4Q3LI73 84 aa5.81□□□□□ -1.48
CCDC28B-204ENST00000469003 C10orf95Q9H7T3 257 aa5.81□□□□□ -1.48
CCDC28B-204ENST00000469003 TNP1P09430 55 aa5.8□□□□□ -1.48
CCDC28B-204ENST00000469003 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
CCDC28B-204ENST00000469003 TMEM258P61165 79 aa5.79□□□□□ -1.48
CCDC28B-204ENST00000469003 PRO0628Q9UI54 55 aa5.79□□□□□ -1.48
CCDC28B-204ENST00000469003 KRTAP5-7Q6L8G8 165 aa5.77□□□□□ -1.49
CCDC28B-204ENST00000469003 KRTAP4-3Q9BYR4 195 aa5.75□□□□□ -1.49
CCDC28B-204ENST00000469003 V9GYY9 64 aa5.74□□□□□ -1.49
CCDC28B-204ENST00000469003 KRTAP5-4Q6L8H1 288 aa5.73□□□□□ -1.49
CCDC28B-204ENST00000469003 PRR15LQ9BU68 103 aa5.66□□□□□ -1.5
CCDC28B-204ENST00000469003 SPRR5A0A1B0GTR4 108 aa5.64□□□□□ -1.51
CCDC28B-204ENST00000469003 KRTAP12-3P60328 96 aa5.6□□□□□ -1.51
CCDC28B-204ENST00000469003 ATP5EP56381 51 aaPredicted RBP5.58□□□□□ -1.52
CCDC28B-204ENST00000469003 LINC01558Q9Y6Z2 57 aa5.57□□□□□ -1.52
CCDC28B-204ENST00000469003 UQCR11O14957 56 aa5.47□□□□□ -1.53
CCDC28B-204ENST00000469003 PMAIP1Q13794 54 aa5.47□□□□□ -1.53
CCDC28B-204ENST00000469003 BRK1Q8WUW1 75 aa5.44□□□□□ -1.54
CCDC28B-204ENST00000469003 KRTAP5-5Q701N2 237 aaPredicted RBP5.43□□□□□ -1.54
CCDC28B-204ENST00000469003 KRTAP23-1A1A580 65 aa5.42□□□□□ -1.54
CCDC28B-204ENST00000469003 KRTAP20-2Q3LI61 65 aa5.42□□□□□ -1.54
CCDC28B-204ENST00000469003 KRTAP25-1Q3LHN0 102 aa5.4□□□□□ -1.54
CCDC28B-204ENST00000469003 KRTAP12-4P60329 112 aa5.33□□□□□ -1.56
CCDC28B-204ENST00000469003 MIR22HGQ0VDD5 57 aa5.32□□□□□ -1.56
CCDC28B-204ENST00000469003 Q1T7F1 81 aa5.27□□□□□ -1.57
CCDC28B-204ENST00000469003 K7ERS5 55 aa5.26□□□□□ -1.57
CCDC28B-204ENST00000469003 KTN1-AS1Q86SY8 53 aa5.26□□□□□ -1.57
CCDC28B-204ENST00000469003 SYNE1Q8NF91 8797 aaKnown RBP5.22□□□□□ -1.57
CCDC28B-204ENST00000469003 KRTAP15-1Q3LI76 137 aa5.18□□□□□ -1.58
CCDC28B-204ENST00000469003 AHNAKQ09666 5890 aaKnown RBP5.18□□□□□ -1.58
CCDC28B-204ENST00000469003 LCE3CQ5T5A8 94 aa5.14□□□□□ -1.59
CCDC28B-204ENST00000469003 PSPHP1O15172 72 aa5.11□□□□□ -1.59
CCDC28B-204ENST00000469003 MUC5ACP98088 5654 aa5.09□□□□□ -1.6
CCDC28B-204ENST00000469003 MT1AP04731 61 aa5.02□□□□□ -1.61
CCDC28B-204ENST00000469003 CDC42SE1Q9NRR8 79 aa5.01□□□□□ -1.61
CCDC28B-204ENST00000469003 MUC5BQ9HC84 5762 aaPredicted RBP5.01□□□□□ -1.61
CCDC28B-204ENST00000469003 KRTAP5-2Q701N4 177 aa5□□□□□ -1.61
CCDC28B-204ENST00000469003 KRTAP6-1Q3LI64 71 aa4.99□□□□□ -1.61
CCDC28B-204ENST00000469003 KRTAP5-8O75690 187 aa4.94□□□□□ -1.62
CCDC28B-204ENST00000469003 A6NED7 52 aa4.93□□□□□ -1.62
CCDC28B-204ENST00000469003 PRAC1Q96KF2 57 aa4.93□□□□□ -1.62
CCDC28B-204ENST00000469003 ROMO1P60602 79 aa4.86□□□□□ -1.63
CCDC28B-204ENST00000469003 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
CCDC28B-204ENST00000469003 KRTAP6-2Q3LI66 62 aa4.79□□□□□ -1.64
CCDC28B-204ENST00000469003 OBSCNQ5VST9 7968 aa4.76□□□□□ -1.65
CCDC28B-204ENST00000469003 MT3P25713 68 aa4.59□□□□□ -1.67
CCDC28B-204ENST00000469003 KRTAP5-1Q6L8H4 278 aa4.5□□□□□ -1.69
CCDC28B-204ENST00000469003 LUZP6Q538Z0 58 aa4.36□□□□□ -1.71
CCDC28B-204ENST00000469003 NDUFAF8A1L188 74 aa4.28□□□□□ -1.72
CCDC28B-204ENST00000469003 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
CCDC28B-204ENST00000469003 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.25□□□□□ -1.73
CCDC28B-204ENST00000469003 KRTAP5-11Q6L8G4 156 aa4.05□□□□□ -1.76
CCDC28B-204ENST00000469003 LCE1BQ5T7P3 118 aa4.01□□□□□ -1.77
CCDC28B-204ENST00000469003 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
CCDC28B-204ENST00000469003 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
CCDC28B-204ENST00000469003 INE1O15225 51 aa3.6□□□□□ -1.83
CCDC28B-204ENST00000469003 KRTAP4-4Q9BYR3 166 aa3.58□□□□□ -1.84
CCDC28B-204ENST00000469003 LCE1FQ5T754 118 aa3.54□□□□□ -1.84
CCDC28B-204ENST00000469003 PHGR1C9JFL3 82 aa3.51□□□□□ -1.85
CCDC28B-204ENST00000469003 LCE3EQ5T5B0 92 aa3.43□□□□□ -1.86
CCDC28B-204ENST00000469003 KRTAP21-2Q3LI59 83 aa3.29□□□□□ -1.88
CCDC28B-204ENST00000469003 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
CCDC28B-204ENST00000469003 KRTAP21-1Q3LI58 79 aa2.66□□□□□ -1.98
CCDC28B-204ENST00000469003 PRM1P04553 51 aa2.47□□□□□ -2.01
CCDC28B-204ENST00000469003 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 126.3 ms