RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 AHNAK2Q8IVF2 5795 aa7.45□□□□□ -1.22
SHANK1-206ENST00000468654 LCE3AQ5TA76 89 aa7.42□□□□□ -1.22
SHANK1-206ENST00000468654 C10orf95Q9H7T3 257 aa7.41□□□□□ -1.22
SHANK1-206ENST00000468654 TNP1P09430 55 aa7.37□□□□□ -1.23
SHANK1-206ENST00000468654 KRTAP4-3Q9BYR4 195 aa7.33□□□□□ -1.24
SHANK1-206ENST00000468654 KRTAP5-4Q6L8H1 288 aa7.32□□□□□ -1.24
SHANK1-206ENST00000468654 KRTAP5-10Q6L8G5 202 aa7.26□□□□□ -1.25
SHANK1-206ENST00000468654 LINC01558Q9Y6Z2 57 aa7.26□□□□□ -1.25
SHANK1-206ENST00000468654 KRTAP4-6Q9BYQ5 205 aa7.23□□□□□ -1.25
SHANK1-206ENST00000468654 PRR15LQ9BU68 103 aa7.21□□□□□ -1.26
SHANK1-206ENST00000468654 RPS28P62857 69 aaKnown RBP7.18□□□□□ -1.26
SHANK1-206ENST00000468654 KRTAP12-3P60328 96 aa7.12□□□□□ -1.27
SHANK1-206ENST00000468654 Q1T7F1 81 aa7.12□□□□□ -1.27
SHANK1-206ENST00000468654 V9GYY9 64 aa7.11□□□□□ -1.27
SHANK1-206ENST00000468654 KRTAP4-7Q9BYR0 210 aa7.1□□□□□ -1.27
SHANK1-206ENST00000468654 PSPHP1O15172 72 aa7.01□□□□□ -1.29
SHANK1-206ENST00000468654 KRTAP5-7Q6L8G8 165 aa7.01□□□□□ -1.29
SHANK1-206ENST00000468654 KRTAP5-3Q6L8H2 238 aa7□□□□□ -1.29
SHANK1-206ENST00000468654 UQCR11O14957 56 aa6.97□□□□□ -1.29
SHANK1-206ENST00000468654 KRTAP20-2Q3LI61 65 aa6.94□□□□□ -1.3
SHANK1-206ENST00000468654 KRTAP5-5Q701N2 237 aaPredicted RBP6.93□□□□□ -1.3
SHANK1-206ENST00000468654 SVIPQ8NHG7 77 aa6.91□□□□□ -1.3
SHANK1-206ENST00000468654 KRTAP25-1Q3LHN0 102 aa6.87□□□□□ -1.31
SHANK1-206ENST00000468654 MIR22HGQ0VDD5 57 aa6.85□□□□□ -1.31
SHANK1-206ENST00000468654 SPRR5A0A1B0GTR4 108 aa6.83□□□□□ -1.32
SHANK1-206ENST00000468654 A6NED7 52 aa6.79□□□□□ -1.32
SHANK1-206ENST00000468654 KRTAP12-4P60329 112 aa6.75□□□□□ -1.33
SHANK1-206ENST00000468654 LOC100996750A0A140TA64 210 aa6.73□□□□□ -1.33
SHANK1-206ENST00000468654 KRTAP19-4Q3LI73 84 aa6.72□□□□□ -1.33
SHANK1-206ENST00000468654 SYNE1Q8NF91 8797 aaKnown RBP6.69□□□□□ -1.34
SHANK1-206ENST00000468654 K7ERS5 55 aa6.69□□□□□ -1.34
SHANK1-206ENST00000468654 CDC42SE1Q9NRR8 79 aa6.64□□□□□ -1.35
SHANK1-206ENST00000468654 KRTAP23-1A1A580 65 aa6.61□□□□□ -1.35
SHANK1-206ENST00000468654 KRTAP15-1Q3LI76 137 aa6.59□□□□□ -1.35
SHANK1-206ENST00000468654 LCE3CQ5T5A8 94 aa6.53□□□□□ -1.36
SHANK1-206ENST00000468654 BRK1Q8WUW1 75 aa6.41□□□□□ -1.38
SHANK1-206ENST00000468654 KRTAP4-11Q9BYQ6 195 aa6.39□□□□□ -1.39
SHANK1-206ENST00000468654 MT1AP04731 61 aa6.38□□□□□ -1.39
SHANK1-206ENST00000468654 KRTAP5-2Q701N4 177 aa6.37□□□□□ -1.39
SHANK1-206ENST00000468654 KRTAP6-1Q3LI64 71 aa6.35□□□□□ -1.39
SHANK1-206ENST00000468654 ROMO1P60602 79 aa6.28□□□□□ -1.4
SHANK1-206ENST00000468654 KRTAP5-8O75690 187 aa6.21□□□□□ -1.42
SHANK1-206ENST00000468654 KRTAP9-6A8MVA2 160 aa6.2□□□□□ -1.42
SHANK1-206ENST00000468654 KRTAP9-4Q9BYQ2 154 aa6.16□□□□□ -1.42
SHANK1-206ENST00000468654 MUC5ACP98088 5654 aa6.16□□□□□ -1.42
SHANK1-206ENST00000468654 AHNAKQ09666 5890 aaKnown RBP6.15□□□□□ -1.42
SHANK1-206ENST00000468654 MUC5BQ9HC84 5762 aaPredicted RBP6.14□□□□□ -1.43
SHANK1-206ENST00000468654 KRTAP6-2Q3LI66 62 aa6.09□□□□□ -1.43
SHANK1-206ENST00000468654 PRO0628Q9UI54 55 aa6.06□□□□□ -1.44
SHANK1-206ENST00000468654 OBSCNQ5VST9 7968 aa6.04□□□□□ -1.44
SHANK1-206ENST00000468654 PMAIP1Q13794 54 aa6.01□□□□□ -1.45
SHANK1-206ENST00000468654 KRTAP9-9Q9BYP9 154 aa5.89□□□□□ -1.47
SHANK1-206ENST00000468654 MT3P25713 68 aa5.83□□□□□ -1.48
SHANK1-206ENST00000468654 KRTAP5-1Q6L8H4 278 aa5.77□□□□□ -1.49
SHANK1-206ENST00000468654 PRAC1Q96KF2 57 aa5.74□□□□□ -1.49
SHANK1-206ENST00000468654 H3BS24 57 aa5.72□□□□□ -1.49
SHANK1-206ENST00000468654 KTN1-AS1Q86SY8 53 aa5.69□□□□□ -1.5
SHANK1-206ENST00000468654 LCE1EQ5T753 118 aa5.41□□□□□ -1.54
SHANK1-206ENST00000468654 KRTAP4-2Q9BYR5 136 aa5.15□□□□□ -1.59
SHANK1-206ENST00000468654 A0A0A0MQY5 61 aa5.11□□□□□ -1.59
SHANK1-206ENST00000468654 LCE1BQ5T7P3 118 aa5.08□□□□□ -1.6
SHANK1-206ENST00000468654 LCE1CQ5T751 118 aa5.02□□□□□ -1.61
SHANK1-206ENST00000468654 KRTAP4-12Q9BQ66 201 aa4.76□□□□□ -1.65
SHANK1-206ENST00000468654 LUZP6Q538Z0 58 aa4.68□□□□□ -1.66
SHANK1-206ENST00000468654 LCE3DQ9BYE3 92 aa4.66□□□□□ -1.66
SHANK1-206ENST00000468654 KRTAP5-11Q6L8G4 156 aa4.59□□□□□ -1.67
SHANK1-206ENST00000468654 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.56□□□□□ -1.68
SHANK1-206ENST00000468654 LCE1FQ5T754 118 aa4.48□□□□□ -1.69
SHANK1-206ENST00000468654 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
SHANK1-206ENST00000468654 NDUFAF8A1L188 74 aa4.3□□□□□ -1.72
SHANK1-206ENST00000468654 PHGR1C9JFL3 82 aa4.22□□□□□ -1.73
SHANK1-206ENST00000468654 KRTAP21-2Q3LI59 83 aa4.19□□□□□ -1.74
SHANK1-206ENST00000468654 KRTAP4-4Q9BYR3 166 aa3.85□□□□□ -1.79
SHANK1-206ENST00000468654 MUC19Q7Z5P9 8384 aa3.73□□□□□ -1.81
SHANK1-206ENST00000468654 INE1O15225 51 aa3.66□□□□□ -1.82
SHANK1-206ENST00000468654 PRM1P04553 51 aa3.26□□□□□ -1.89
SHANK1-206ENST00000468654 KRTAP21-1Q3LI58 79 aa3.19□□□□□ -1.9
SHANK1-206ENST00000468654 MUC16Q8WXI7 14507 aa2.68□□□□□ -1.98
Retrieved 78 of 20,778 RNA–protein pairs in 40.1 ms