RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 KRTAP4-6Q9BYQ5 205 aa8.42□□□□□ -1.06
PTCH1-210ENST00000468211 KRTAP4-7Q9BYR0 210 aa8.33□□□□□ -1.08
PTCH1-210ENST00000468211 KRTAP5-10Q6L8G5 202 aa8.31□□□□□ -1.08
PTCH1-210ENST00000468211 KRTAP12-3P60328 96 aa8.2□□□□□ -1.1
PTCH1-210ENST00000468211 ANAPC13Q9BS18 74 aa8.12□□□□□ -1.11
PTCH1-210ENST00000468211 PRR15LQ9BU68 103 aa8.09□□□□□ -1.11
PTCH1-210ENST00000468211 CCDC179H3BU77 68 aa8.05□□□□□ -1.12
PTCH1-210ENST00000468211 KRTAP5-3Q6L8H2 238 aa8.05□□□□□ -1.12
PTCH1-210ENST00000468211 KRTAP5-5Q701N2 237 aaPredicted RBP8.05□□□□□ -1.12
PTCH1-210ENST00000468211 KRTAP20-2Q3LI61 65 aa8.04□□□□□ -1.12
PTCH1-210ENST00000468211 LINC01558Q9Y6Z2 57 aa8.02□□□□□ -1.13
PTCH1-210ENST00000468211 KRTAP5-7Q6L8G8 165 aa8□□□□□ -1.13
PTCH1-210ENST00000468211 SPRR5A0A1B0GTR4 108 aa7.93□□□□□ -1.14
PTCH1-210ENST00000468211 ATP5EP56381 51 aaPredicted RBP7.93□□□□□ -1.14
PTCH1-210ENST00000468211 LOC100996750A0A140TA64 210 aa7.89□□□□□ -1.15
PTCH1-210ENST00000468211 UQCR11O14957 56 aa7.85□□□□□ -1.15
PTCH1-210ENST00000468211 KRTAP12-4P60329 112 aa7.83□□□□□ -1.16
PTCH1-210ENST00000468211 KRTAP25-1Q3LHN0 102 aa7.8□□□□□ -1.16
PTCH1-210ENST00000468211 SYNE1Q8NF91 8797 aaKnown RBP7.78□□□□□ -1.16
PTCH1-210ENST00000468211 MIR22HGQ0VDD5 57 aa7.67□□□□□ -1.18
PTCH1-210ENST00000468211 TMEM258P61165 79 aa7.63□□□□□ -1.19
PTCH1-210ENST00000468211 KRTAP19-4Q3LI73 84 aa7.61□□□□□ -1.19
PTCH1-210ENST00000468211 KRTAP15-1Q3LI76 137 aa7.56□□□□□ -1.2
PTCH1-210ENST00000468211 LCE3CQ5T5A8 94 aa7.54□□□□□ -1.2
PTCH1-210ENST00000468211 K7ERS5 55 aa7.5□□□□□ -1.21
PTCH1-210ENST00000468211 KRTAP23-1A1A580 65 aa7.47□□□□□ -1.21
PTCH1-210ENST00000468211 PSPHP1O15172 72 aa7.4□□□□□ -1.22
PTCH1-210ENST00000468211 KRTAP6-1Q3LI64 71 aa7.4□□□□□ -1.22
PTCH1-210ENST00000468211 KRTAP5-2Q701N4 177 aa7.39□□□□□ -1.23
PTCH1-210ENST00000468211 KRTAP4-11Q9BYQ6 195 aa7.39□□□□□ -1.23
PTCH1-210ENST00000468211 MT1AP04731 61 aa7.38□□□□□ -1.23
PTCH1-210ENST00000468211 Q1T7F1 81 aa7.25□□□□□ -1.25
PTCH1-210ENST00000468211 V9GYY9 64 aa7.24□□□□□ -1.25
PTCH1-210ENST00000468211 KRTAP9-6A8MVA2 160 aa7.2□□□□□ -1.26
PTCH1-210ENST00000468211 KRTAP5-8O75690 187 aa7.18□□□□□ -1.26
PTCH1-210ENST00000468211 KRTAP9-4Q9BYQ2 154 aa7.16□□□□□ -1.26
PTCH1-210ENST00000468211 KRTAP6-2Q3LI66 62 aa7.11□□□□□ -1.27
PTCH1-210ENST00000468211 CDC42SE1Q9NRR8 79 aa7.11□□□□□ -1.27
PTCH1-210ENST00000468211 A6NED7 52 aa7.07□□□□□ -1.28
PTCH1-210ENST00000468211 AHNAKQ09666 5890 aaKnown RBP7.05□□□□□ -1.28
PTCH1-210ENST00000468211 MUC5ACP98088 5654 aa7.02□□□□□ -1.29
PTCH1-210ENST00000468211 ROMO1P60602 79 aa7.01□□□□□ -1.29
PTCH1-210ENST00000468211 MUC5BQ9HC84 5762 aaPredicted RBP7□□□□□ -1.29
PTCH1-210ENST00000468211 RPS28P62857 69 aaKnown RBP7□□□□□ -1.29
PTCH1-210ENST00000468211 OBSCNQ5VST9 7968 aa6.98□□□□□ -1.29
PTCH1-210ENST00000468211 KRTAP9-9Q9BYP9 154 aa6.8□□□□□ -1.32
PTCH1-210ENST00000468211 MT3P25713 68 aa6.73□□□□□ -1.33
PTCH1-210ENST00000468211 KRTAP5-1Q6L8H4 278 aa6.69□□□□□ -1.34
PTCH1-210ENST00000468211 SVIPQ8NHG7 77 aa6.45□□□□□ -1.38
PTCH1-210ENST00000468211 PCP4P48539 62 aa6.29□□□□□ -1.4
PTCH1-210ENST00000468211 LCE1EQ5T753 118 aa6.25□□□□□ -1.41
PTCH1-210ENST00000468211 KRTAP4-2Q9BYR5 136 aa6□□□□□ -1.45
PTCH1-210ENST00000468211 LCE1BQ5T7P3 118 aa5.95□□□□□ -1.46
PTCH1-210ENST00000468211 KRTAP4-12Q9BQ66 201 aa5.89□□□□□ -1.47
PTCH1-210ENST00000468211 LCE1CQ5T751 118 aa5.81□□□□□ -1.48
PTCH1-210ENST00000468211 BRK1Q8WUW1 75 aa5.67□□□□□ -1.5
PTCH1-210ENST00000468211 H3BS24 57 aa5.55□□□□□ -1.52
PTCH1-210ENST00000468211 LCE3DQ9BYE3 92 aa5.35□□□□□ -1.55
PTCH1-210ENST00000468211 PRAC1Q96KF2 57 aa5.3□□□□□ -1.56
PTCH1-210ENST00000468211 PMAIP1Q13794 54 aa5.29□□□□□ -1.56
PTCH1-210ENST00000468211 KRTAP5-11Q6L8G4 156 aa5.29□□□□□ -1.56
PTCH1-210ENST00000468211 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.25□□□□□ -1.57
PTCH1-210ENST00000468211 LCE1FQ5T754 118 aa5.18□□□□□ -1.58
PTCH1-210ENST00000468211 LCE3EQ5T5B0 92 aa4.98□□□□□ -1.61
PTCH1-210ENST00000468211 PRO0628Q9UI54 55 aa4.97□□□□□ -1.61
PTCH1-210ENST00000468211 A0A0A0MQY5 61 aa4.95□□□□□ -1.62
PTCH1-210ENST00000468211 KRTAP21-2Q3LI59 83 aa4.88□□□□□ -1.63
PTCH1-210ENST00000468211 PHGR1C9JFL3 82 aa4.83□□□□□ -1.64
PTCH1-210ENST00000468211 KTN1-AS1Q86SY8 53 aa4.67□□□□□ -1.66
PTCH1-210ENST00000468211 KRTAP4-4Q9BYR3 166 aa4.55□□□□□ -1.68
PTCH1-210ENST00000468211 LUZP6Q538Z0 58 aa4.38□□□□□ -1.71
PTCH1-210ENST00000468211 MUC19Q7Z5P9 8384 aa4.32□□□□□ -1.72
PTCH1-210ENST00000468211 KRTAP21-1Q3LI58 79 aa3.64□□□□□ -1.83
PTCH1-210ENST00000468211 NDUFAF8A1L188 74 aa3.6□□□□□ -1.83
PTCH1-210ENST00000468211 PRM1P04553 51 aa3.6□□□□□ -1.83
PTCH1-210ENST00000468211 MUC16Q8WXI7 14507 aa3.11□□□□□ -1.91
PTCH1-210ENST00000468211 INE1O15225 51 aa2.88□□□□□ -1.95
Retrieved 77 of 20,778 RNA–protein pairs in 11.1 ms