RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 PCP4P48539 62 aa5.25□□□□□ -1.57
SEMA3D-203ENST00000463315 RPS28P62857 69 aaKnown RBP5.22□□□□□ -1.57
SEMA3D-203ENST00000463315 MIR22HGQ0VDD5 57 aa5.22□□□□□ -1.57
SEMA3D-203ENST00000463315 KRTAP20-1Q3LI63 56 aa5.2□□□□□ -1.58
SEMA3D-203ENST00000463315 KRTAP5-11Q6L8G4 156 aa5.19□□□□□ -1.58
SEMA3D-203ENST00000463315 PSPHP1O15172 72 aa5.18□□□□□ -1.58
SEMA3D-203ENST00000463315 TNP1P09430 55 aa5.17□□□□□ -1.58
SEMA3D-203ENST00000463315 C10orf95Q9H7T3 257 aa5.17□□□□□ -1.58
SEMA3D-203ENST00000463315 KRTAP2-3P0C7H8 128 aa5.15□□□□□ -1.59
SEMA3D-203ENST00000463315 KRTAP2-4Q9BYR9 128 aa5.15□□□□□ -1.59
SEMA3D-203ENST00000463315 KRTAP19-7Q3SYF9 63 aa5.14□□□□□ -1.59
SEMA3D-203ENST00000463315 K7ERS5 55 aa5.13□□□□□ -1.59
SEMA3D-203ENST00000463315 SPRR2DP22532 72 aa5.1□□□□□ -1.59
SEMA3D-203ENST00000463315 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.09□□□□□ -1.59
SEMA3D-203ENST00000463315 MT1EP04732 61 aa5.08□□□□□ -1.6
SEMA3D-203ENST00000463315 A6NED7 52 aa5.05□□□□□ -1.6
SEMA3D-203ENST00000463315 MT3P25713 68 aa5.04□□□□□ -1.6
SEMA3D-203ENST00000463315 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
SEMA3D-203ENST00000463315 LCE1EQ5T753 118 aa5.03□□□□□ -1.6
SEMA3D-203ENST00000463315 KRTAP19-3Q7Z4W3 81 aa5.02□□□□□ -1.61
SEMA3D-203ENST00000463315 LCE3AQ5TA76 89 aa5.01□□□□□ -1.61
SEMA3D-203ENST00000463315 KRTAP25-1Q3LHN0 102 aa5□□□□□ -1.61
SEMA3D-203ENST00000463315 KRTAP2-1Q9BYU5 128 aa5□□□□□ -1.61
SEMA3D-203ENST00000463315 A0A0A0MQY5 61 aa4.96□□□□□ -1.62
SEMA3D-203ENST00000463315 MT1GP13640 62 aa4.96□□□□□ -1.62
SEMA3D-203ENST00000463315 PP632Q6XCG6 107 aa4.93□□□□□ -1.62
SEMA3D-203ENST00000463315 MT1LQ93083 61 aa4.89□□□□□ -1.63
SEMA3D-203ENST00000463315 CDC42SE1Q9NRR8 79 aa4.89□□□□□ -1.63
SEMA3D-203ENST00000463315 KRTAP12-3P60328 96 aa4.87□□□□□ -1.63
SEMA3D-203ENST00000463315 DSTQ03001 7570 aaKnown RBP4.83□□□□□ -1.64
SEMA3D-203ENST00000463315 MT1MQ8N339 61 aa4.82□□□□□ -1.64
SEMA3D-203ENST00000463315 ROMO1P60602 79 aa4.78□□□□□ -1.64
SEMA3D-203ENST00000463315 SVIPQ8NHG7 77 aa4.76□□□□□ -1.65
SEMA3D-203ENST00000463315 LCE1FQ5T754 118 aa4.65□□□□□ -1.67
SEMA3D-203ENST00000463315 KRTAP4-3Q9BYR4 195 aa4.62□□□□□ -1.67
SEMA3D-203ENST00000463315 KRTAP5-4Q6L8H1 288 aa4.53□□□□□ -1.68
SEMA3D-203ENST00000463315 BRK1Q8WUW1 75 aa4.52□□□□□ -1.69
SEMA3D-203ENST00000463315 LCE3CQ5T5A8 94 aa4.51□□□□□ -1.69
SEMA3D-203ENST00000463315 KRTAP9-6A8MVA2 160 aa4.49□□□□□ -1.69
SEMA3D-203ENST00000463315 KRTAP5-1Q6L8H4 278 aa4.46□□□□□ -1.7
SEMA3D-203ENST00000463315 KRTAP5-5Q701N2 237 aaPredicted RBP4.43□□□□□ -1.7
SEMA3D-203ENST00000463315 HMCN1Q96RW7 5635 aa4.42□□□□□ -1.7
SEMA3D-203ENST00000463315 MT4P47944 62 aa4.4□□□□□ -1.71
SEMA3D-203ENST00000463315 SPRR5A0A1B0GTR4 108 aa4.29□□□□□ -1.72
SEMA3D-203ENST00000463315 KRTAP12-4P60329 112 aa4.29□□□□□ -1.72
SEMA3D-203ENST00000463315 PMAIP1Q13794 54 aa4.29□□□□□ -1.72
SEMA3D-203ENST00000463315 KRTAP4-4Q9BYR3 166 aa4.27□□□□□ -1.73
SEMA3D-203ENST00000463315 KRTAP20-2Q3LI61 65 aa4.23□□□□□ -1.73
SEMA3D-203ENST00000463315 GPR98Q8WXG9 6306 aa4.2□□□□□ -1.74
SEMA3D-203ENST00000463315 SYNE1Q8NF91 8797 aaKnown RBP4.19□□□□□ -1.74
SEMA3D-203ENST00000463315 MT1AP04731 61 aa4.18□□□□□ -1.74
SEMA3D-203ENST00000463315 PRO0628Q9UI54 55 aa4.15□□□□□ -1.75
SEMA3D-203ENST00000463315 NDUFAF8A1L188 74 aa4.14□□□□□ -1.75
SEMA3D-203ENST00000463315 AHNAK2Q8IVF2 5795 aa4.13□□□□□ -1.75
SEMA3D-203ENST00000463315 KRTAP6-1Q3LI64 71 aa4.11□□□□□ -1.75
SEMA3D-203ENST00000463315 PRAC1Q96KF2 57 aa4.08□□□□□ -1.76
SEMA3D-203ENST00000463315 KRTAP5-10Q6L8G5 202 aa4.07□□□□□ -1.76
SEMA3D-203ENST00000463315 LCE3EQ5T5B0 92 aa4.03□□□□□ -1.76
SEMA3D-203ENST00000463315 KRTAP5-2Q701N4 177 aa4□□□□□ -1.77
SEMA3D-203ENST00000463315 OBSCNQ5VST9 7968 aa3.97□□□□□ -1.77
SEMA3D-203ENST00000463315 KTN1-AS1Q86SY8 53 aa3.92□□□□□ -1.78
SEMA3D-203ENST00000463315 KRTAP5-7Q6L8G8 165 aa3.91□□□□□ -1.78
SEMA3D-203ENST00000463315 KRTAP6-2Q3LI66 62 aa3.89□□□□□ -1.79
SEMA3D-203ENST00000463315 KRTAP5-8O75690 187 aa3.68□□□□□ -1.82
SEMA3D-203ENST00000463315 LUZP6Q538Z0 58 aa3.46□□□□□ -1.86
SEMA3D-203ENST00000463315 MUC5ACP98088 5654 aa3.42□□□□□ -1.86
SEMA3D-203ENST00000463315 MUC5BQ9HC84 5762 aaPredicted RBP3.41□□□□□ -1.86
SEMA3D-203ENST00000463315 AHNAKQ09666 5890 aaKnown RBP3.35□□□□□ -1.87
SEMA3D-203ENST00000463315 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
SEMA3D-203ENST00000463315 LCE1BQ5T7P3 118 aa3.3□□□□□ -1.88
SEMA3D-203ENST00000463315 LCE3DQ9BYE3 92 aa3.3□□□□□ -1.88
SEMA3D-203ENST00000463315 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
SEMA3D-203ENST00000463315 KRTAP21-2Q3LI59 83 aa2.72□□□□□ -1.97
SEMA3D-203ENST00000463315 PHGR1C9JFL3 82 aa2.51□□□□□ -2.01
SEMA3D-203ENST00000463315 INE1O15225 51 aa2.43□□□□□ -2.02
SEMA3D-203ENST00000463315 PRM1P04553 51 aa2.41□□□□□ -2.02
SEMA3D-203ENST00000463315 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
SEMA3D-203ENST00000463315 MUC16Q8WXI7 14507 aa1.67□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 48.8 ms