RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 LINC01558Q9Y6Z2 57 aa2.56□□□□□ -2
PTPRF-210ENST00000463041 HMCN1Q96RW7 5635 aa2.54□□□□□ -2
PTPRF-210ENST00000463041 LCE1DQ5T752 114 aa2.54□□□□□ -2
PTPRF-210ENST00000463041 UQCR11O14957 56 aa2.52□□□□□ -2.01
PTPRF-210ENST00000463041 MT4P47944 62 aa2.5□□□□□ -2.01
PTPRF-210ENST00000463041 TMEM258P61165 79 aa2.5□□□□□ -2.01
PTPRF-210ENST00000463041 KRTAP4-3Q9BYR4 195 aa2.5□□□□□ -2.01
PTPRF-210ENST00000463041 AHNAK2Q8IVF2 5795 aa2.5□□□□□ -2.01
PTPRF-210ENST00000463041 KRTAP12-3P60328 96 aa2.49□□□□□ -2.01
PTPRF-210ENST00000463041 KRTAP5-4Q6L8H1 288 aa2.49□□□□□ -2.01
PTPRF-210ENST00000463041 MIR22HGQ0VDD5 57 aa2.44□□□□□ -2.02
PTPRF-210ENST00000463041 KRTAP25-1Q3LHN0 102 aa2.44□□□□□ -2.02
PTPRF-210ENST00000463041 K7ERS5 55 aa2.43□□□□□ -2.02
PTPRF-210ENST00000463041 KRTAP4-6Q9BYQ5 205 aa2.43□□□□□ -2.02
PTPRF-210ENST00000463041 KRTAP4-7Q9BYR0 210 aa2.43□□□□□ -2.02
PTPRF-210ENST00000463041 KRTAP19-4Q3LI73 84 aa2.42□□□□□ -2.02
PTPRF-210ENST00000463041 V9GYY9 64 aa2.4□□□□□ -2.03
PTPRF-210ENST00000463041 KRTAP23-1A1A580 65 aa2.38□□□□□ -2.03
PTPRF-210ENST00000463041 RPS28P62857 69 aaKnown RBP2.38□□□□□ -2.03
PTPRF-210ENST00000463041 Q1T7F1 81 aa2.37□□□□□ -2.03
PTPRF-210ENST00000463041 KRTAP5-10Q6L8G5 202 aa2.37□□□□□ -2.03
PTPRF-210ENST00000463041 KRTAP5-5Q701N2 237 aaPredicted RBP2.37□□□□□ -2.03
PTPRF-210ENST00000463041 SYNE1Q8NF91 8797 aaKnown RBP2.36□□□□□ -2.03
PTPRF-210ENST00000463041 SPRR5A0A1B0GTR4 108 aa2.35□□□□□ -2.03
PTPRF-210ENST00000463041 PSPHP1O15172 72 aa2.35□□□□□ -2.03
PTPRF-210ENST00000463041 KRTAP12-4P60329 112 aa2.35□□□□□ -2.03
PTPRF-210ENST00000463041 KRTAP20-2Q3LI61 65 aa2.34□□□□□ -2.03
PTPRF-210ENST00000463041 KRTAP15-1Q3LI76 137 aa2.33□□□□□ -2.04
PTPRF-210ENST00000463041 KRTAP5-3Q6L8H2 238 aa2.32□□□□□ -2.04
PTPRF-210ENST00000463041 LOC100996750A0A140TA64 210 aa2.31□□□□□ -2.04
PTPRF-210ENST00000463041 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
PTPRF-210ENST00000463041 LCE3CQ5T5A8 94 aa2.3□□□□□ -2.04
PTPRF-210ENST00000463041 A6NED7 52 aa2.28□□□□□ -2.04
PTPRF-210ENST00000463041 CDC42SE1Q9NRR8 79 aa2.27□□□□□ -2.05
PTPRF-210ENST00000463041 ROMO1P60602 79 aa2.23□□□□□ -2.05
PTPRF-210ENST00000463041 MT1AP04731 61 aa2.2□□□□□ -2.06
PTPRF-210ENST00000463041 KRTAP6-1Q3LI64 71 aa2.18□□□□□ -2.06
PTPRF-210ENST00000463041 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
PTPRF-210ENST00000463041 KRTAP4-11Q9BYQ6 195 aa2.16□□□□□ -2.06
PTPRF-210ENST00000463041 BRK1Q8WUW1 75 aa2.15□□□□□ -2.07
PTPRF-210ENST00000463041 KRTAP9-4Q9BYQ2 154 aa2.15□□□□□ -2.07
PTPRF-210ENST00000463041 KRTAP9-6A8MVA2 160 aa2.14□□□□□ -2.07
PTPRF-210ENST00000463041 OBSCNQ5VST9 7968 aa2.1□□□□□ -2.07
PTPRF-210ENST00000463041 KRTAP6-2Q3LI66 62 aa2.09□□□□□ -2.07
PTPRF-210ENST00000463041 KRTAP5-8O75690 187 aa2.08□□□□□ -2.08
PTPRF-210ENST00000463041 AHNAKQ09666 5890 aaKnown RBP2.08□□□□□ -2.08
PTPRF-210ENST00000463041 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
PTPRF-210ENST00000463041 MT3P25713 68 aa2.04□□□□□ -2.08
PTPRF-210ENST00000463041 PMAIP1Q13794 54 aa2.04□□□□□ -2.08
PTPRF-210ENST00000463041 PRO0628Q9UI54 55 aa2.04□□□□□ -2.08
PTPRF-210ENST00000463041 MUC5ACP98088 5654 aa2.01□□□□□ -2.09
PTPRF-210ENST00000463041 KRTAP9-9Q9BYP9 154 aa2□□□□□ -2.09
PTPRF-210ENST00000463041 KRTAP5-1Q6L8H4 278 aa1.95□□□□□ -2.1
PTPRF-210ENST00000463041 PRAC1Q96KF2 57 aa1.91□□□□□ -2.1
PTPRF-210ENST00000463041 KTN1-AS1Q86SY8 53 aa1.9□□□□□ -2.11
PTPRF-210ENST00000463041 LCE1EQ5T753 118 aa1.89□□□□□ -2.11
PTPRF-210ENST00000463041 SVIPQ8NHG7 77 aa1.83□□□□□ -2.12
PTPRF-210ENST00000463041 LCE1CQ5T751 118 aa1.75□□□□□ -2.13
PTPRF-210ENST00000463041 LCE1BQ5T7P3 118 aa1.75□□□□□ -2.13
PTPRF-210ENST00000463041 KRTAP4-2Q9BYR5 136 aa1.75□□□□□ -2.13
PTPRF-210ENST00000463041 LCE3DQ9BYE3 92 aa1.66□□□□□ -2.14
PTPRF-210ENST00000463041 KRTAP4-12Q9BQ66 201 aa1.6□□□□□ -2.15
PTPRF-210ENST00000463041 LUZP6Q538Z0 58 aa1.59□□□□□ -2.15
PTPRF-210ENST00000463041 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.58□□□□□ -2.16
PTPRF-210ENST00000463041 LCE1FQ5T754 118 aa1.57□□□□□ -2.16
PTPRF-210ENST00000463041 KRTAP5-11Q6L8G4 156 aa1.57□□□□□ -2.16
PTPRF-210ENST00000463041 LCE3EQ5T5B0 92 aa1.55□□□□□ -2.16
PTPRF-210ENST00000463041 NDUFAF8A1L188 74 aa1.48□□□□□ -2.17
PTPRF-210ENST00000463041 KRTAP21-2Q3LI59 83 aa1.44□□□□□ -2.18
PTPRF-210ENST00000463041 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
PTPRF-210ENST00000463041 KRTAP4-4Q9BYR3 166 aa1.31□□□□□ -2.2
PTPRF-210ENST00000463041 MUC19Q7Z5P9 8384 aa1.3□□□□□ -2.2
PTPRF-210ENST00000463041 A0A0A0MQY5 61 aa1.28□□□□□ -2.2
PTPRF-210ENST00000463041 INE1O15225 51 aa1.2□□□□□ -2.22
PTPRF-210ENST00000463041 H3BS24 57 aa1.13□□□□□ -2.23
PTPRF-210ENST00000463041 PRM1P04553 51 aa1.12□□□□□ -2.23
PTPRF-210ENST00000463041 KRTAP21-1Q3LI58 79 aa1.07□□□□□ -2.24
PTPRF-210ENST00000463041 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 66.3 ms