RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 A0A1B0GU69 56 aa5.36□□□□□ -1.55
SKA3-204ENST00000462482 LCE3AQ5TA76 89 aa5.34□□□□□ -1.55
SKA3-204ENST00000462482 KRTAP5-4Q6L8H1 288 aa5.34□□□□□ -1.55
SKA3-204ENST00000462482 KRTAP5-3Q6L8H2 238 aa5.34□□□□□ -1.55
SKA3-204ENST00000462482 KRTAP4-3Q9BYR4 195 aa5.33□□□□□ -1.56
SKA3-204ENST00000462482 AHNAK2Q8IVF2 5795 aa5.32□□□□□ -1.56
SKA3-204ENST00000462482 COX7CP15954 63 aa5.31□□□□□ -1.56
SKA3-204ENST00000462482 A8MU10 97 aa5.29□□□□□ -1.56
SKA3-204ENST00000462482 KRTAP4-11Q9BYQ6 195 aa5.29□□□□□ -1.56
SKA3-204ENST00000462482 KRTAP5-10Q6L8G5 202 aa5.27□□□□□ -1.57
SKA3-204ENST00000462482 H7BZZ5 65 aa5.25□□□□□ -1.57
SKA3-204ENST00000462482 KRTAP19-4Q3LI73 84 aa5.19□□□□□ -1.58
SKA3-204ENST00000462482 KRTAP12-3P60328 96 aa5.17□□□□□ -1.58
SKA3-204ENST00000462482 PRR15LQ9BU68 103 aa5.17□□□□□ -1.58
SKA3-204ENST00000462482 KRTAP5-7Q6L8G8 165 aa5.12□□□□□ -1.59
SKA3-204ENST00000462482 KRTAP20-2Q3LI61 65 aa5.08□□□□□ -1.6
SKA3-204ENST00000462482 KRTAP12-4P60329 112 aa5.06□□□□□ -1.6
SKA3-204ENST00000462482 SPRR5A0A1B0GTR4 108 aa5.05□□□□□ -1.6
SKA3-204ENST00000462482 KRTAP5-5Q701N2 237 aaPredicted RBP5.01□□□□□ -1.61
SKA3-204ENST00000462482 ANAPC13Q9BS18 74 aa5□□□□□ -1.61
SKA3-204ENST00000462482 ATP5EP56381 51 aaPredicted RBP4.97□□□□□ -1.61
SKA3-204ENST00000462482 LINC01558Q9Y6Z2 57 aa4.96□□□□□ -1.62
SKA3-204ENST00000462482 UQCR11O14957 56 aa4.95□□□□□ -1.62
SKA3-204ENST00000462482 KRTAP25-1Q3LHN0 102 aa4.94□□□□□ -1.62
SKA3-204ENST00000462482 CCDC179H3BU77 68 aa4.86□□□□□ -1.63
SKA3-204ENST00000462482 K7ERS5 55 aa4.86□□□□□ -1.63
SKA3-204ENST00000462482 SYNE1Q8NF91 8797 aaKnown RBP4.83□□□□□ -1.64
SKA3-204ENST00000462482 MIR22HGQ0VDD5 57 aa4.8□□□□□ -1.64
SKA3-204ENST00000462482 KRTAP15-1Q3LI76 137 aa4.75□□□□□ -1.65
SKA3-204ENST00000462482 LCE3CQ5T5A8 94 aa4.72□□□□□ -1.65
SKA3-204ENST00000462482 KRTAP23-1A1A580 65 aa4.71□□□□□ -1.66
SKA3-204ENST00000462482 TMEM258P61165 79 aa4.71□□□□□ -1.66
SKA3-204ENST00000462482 H3BS24 57 aa4.66□□□□□ -1.66
SKA3-204ENST00000462482 MT1AP04731 61 aa4.64□□□□□ -1.67
SKA3-204ENST00000462482 KRTAP5-2Q701N4 177 aa4.62□□□□□ -1.67
SKA3-204ENST00000462482 KRTAP6-1Q3LI64 71 aa4.6□□□□□ -1.67
SKA3-204ENST00000462482 V9GYY9 64 aa4.58□□□□□ -1.68
SKA3-204ENST00000462482 PSPHP1O15172 72 aa4.55□□□□□ -1.68
SKA3-204ENST00000462482 KRTAP5-8O75690 187 aa4.52□□□□□ -1.69
SKA3-204ENST00000462482 CDC42SE1Q9NRR8 79 aa4.51□□□□□ -1.69
SKA3-204ENST00000462482 AHNAKQ09666 5890 aaKnown RBP4.5□□□□□ -1.69
SKA3-204ENST00000462482 RPS28P62857 69 aaKnown RBP4.49□□□□□ -1.69
SKA3-204ENST00000462482 MUC5ACP98088 5654 aa4.47□□□□□ -1.69
SKA3-204ENST00000462482 KRTAP6-2Q3LI66 62 aa4.47□□□□□ -1.69
SKA3-204ENST00000462482 Q1T7F1 81 aa4.46□□□□□ -1.7
SKA3-204ENST00000462482 MUC5BQ9HC84 5762 aaPredicted RBP4.44□□□□□ -1.7
SKA3-204ENST00000462482 A6NED7 52 aa4.42□□□□□ -1.7
SKA3-204ENST00000462482 ROMO1P60602 79 aa4.39□□□□□ -1.71
SKA3-204ENST00000462482 KRTAP9-6A8MVA2 160 aa4.38□□□□□ -1.71
SKA3-204ENST00000462482 OBSCNQ5VST9 7968 aa4.37□□□□□ -1.71
SKA3-204ENST00000462482 PCP4P48539 62 aa4.36□□□□□ -1.71
SKA3-204ENST00000462482 MT3P25713 68 aa4.3□□□□□ -1.72
SKA3-204ENST00000462482 KRTAP5-1Q6L8H4 278 aa4.19□□□□□ -1.74
SKA3-204ENST00000462482 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
SKA3-204ENST00000462482 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.86□□□□□ -1.79
SKA3-204ENST00000462482 LCE1BQ5T7P3 118 aa3.8□□□□□ -1.8
SKA3-204ENST00000462482 LCE1CQ5T751 118 aa3.68□□□□□ -1.82
SKA3-204ENST00000462482 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
SKA3-204ENST00000462482 BRK1Q8WUW1 75 aa3.53□□□□□ -1.84
SKA3-204ENST00000462482 PRO0628Q9UI54 55 aa3.48□□□□□ -1.85
SKA3-204ENST00000462482 LCE3DQ9BYE3 92 aa3.38□□□□□ -1.87
SKA3-204ENST00000462482 PMAIP1Q13794 54 aa3.35□□□□□ -1.87
SKA3-204ENST00000462482 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
SKA3-204ENST00000462482 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
SKA3-204ENST00000462482 KTN1-AS1Q86SY8 53 aa3.22□□□□□ -1.89
SKA3-204ENST00000462482 SVIPQ8NHG7 77 aa3.22□□□□□ -1.89
SKA3-204ENST00000462482 PRAC1Q96KF2 57 aa3.16□□□□□ -1.9
SKA3-204ENST00000462482 LCE3EQ5T5B0 92 aa3.14□□□□□ -1.91
SKA3-204ENST00000462482 PHGR1C9JFL3 82 aa3.13□□□□□ -1.91
SKA3-204ENST00000462482 KRTAP21-2Q3LI59 83 aa3.01□□□□□ -1.93
SKA3-204ENST00000462482 LUZP6Q538Z0 58 aa2.85□□□□□ -1.95
SKA3-204ENST00000462482 A0A0A0MQY5 61 aa2.73□□□□□ -1.97
SKA3-204ENST00000462482 MUC19Q7Z5P9 8384 aa2.72□□□□□ -1.97
SKA3-204ENST00000462482 NDUFAF8A1L188 74 aa2.49□□□□□ -2.01
SKA3-204ENST00000462482 KRTAP21-1Q3LI58 79 aa2.4□□□□□ -2.03
SKA3-204ENST00000462482 PRM1P04553 51 aa2.21□□□□□ -2.06
SKA3-204ENST00000462482 INE1O15225 51 aa2.08□□□□□ -2.08
SKA3-204ENST00000462482 MUC16Q8WXI7 14507 aa1.91□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 87.3 ms