RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 INE1O15225 51 aa2.11□□□□□ -2.07
CSMD3-205ENST00000462254 SPATA8Q6RVD6 105 aa2.11□□□□□ -2.07
CSMD3-205ENST00000462254 KRTAP5-5Q701N2 237 aaPredicted RBP2.1□□□□□ -2.07
CSMD3-205ENST00000462254 LCE3DQ9BYE3 92 aa2.1□□□□□ -2.07
CSMD3-205ENST00000462254 H0YAA0 97 aa2.09□□□□□ -2.07
CSMD3-205ENST00000462254 MT2AP02795 61 aa2.09□□□□□ -2.07
CSMD3-205ENST00000462254 MT1FP04733 61 aa2.08□□□□□ -2.08
CSMD3-205ENST00000462254 KRTAP10-10P60014 251 aa2.05□□□□□ -2.08
CSMD3-205ENST00000462254 KRTAP13-4Q3LI77 160 aa2.02□□□□□ -2.09
CSMD3-205ENST00000462254 SPRR2GQ9BYE4 73 aa2.01□□□□□ -2.09
CSMD3-205ENST00000462254 M0QZ58 72 aa2□□□□□ -2.09
CSMD3-205ENST00000462254 CRIPTQ9P021 101 aa2□□□□□ -2.09
CSMD3-205ENST00000462254 PP632Q6XCG6 107 aa1.98□□□□□ -2.09
CSMD3-205ENST00000462254 MT1BP07438 61 aa1.97□□□□□ -2.09
CSMD3-205ENST00000462254 KRTAP19-8Q3LI54 63 aa1.97□□□□□ -2.09
CSMD3-205ENST00000462254 LCE1CQ5T751 118 aa1.95□□□□□ -2.1
CSMD3-205ENST00000462254 LCE1BQ5T7P3 118 aa1.95□□□□□ -2.1
CSMD3-205ENST00000462254 A0A0D9SG42 100 aa1.94□□□□□ -2.1
CSMD3-205ENST00000462254 KRTAP12-1P59990 96 aa1.93□□□□□ -2.1
CSMD3-205ENST00000462254 SSPOA2VEC9 5147 aa1.89□□□□□ -2.11
CSMD3-205ENST00000462254 PLAC4Q8WY50 150 aa1.89□□□□□ -2.11
CSMD3-205ENST00000462254 USH2AO75445 5202 aa1.89□□□□□ -2.11
CSMD3-205ENST00000462254 MT1XP80297 61 aa1.88□□□□□ -2.11
CSMD3-205ENST00000462254 KRTAP19-6Q3LI70 58 aa1.88□□□□□ -2.11
CSMD3-205ENST00000462254 KRTAP5-2Q701N4 177 aa1.88□□□□□ -2.11
CSMD3-205ENST00000462254 KRTAP6-3Q3LI67 103 aa1.87□□□□□ -2.11
CSMD3-205ENST00000462254 CRCT1Q9UGL9 99 aa1.86□□□□□ -2.11
CSMD3-205ENST00000462254 C10orf95Q9H7T3 257 aa1.83□□□□□ -2.12
CSMD3-205ENST00000462254 FSIP2Q5CZC0 6907 aa1.82□□□□□ -2.12
CSMD3-205ENST00000462254 FCGBPQ9Y6R7 5405 aaPredicted RBP1.78□□□□□ -2.12
CSMD3-205ENST00000462254 TNP1P09430 55 aa1.76□□□□□ -2.13
CSMD3-205ENST00000462254 KRTAP8-1Q8IUC2 63 aa1.7□□□□□ -2.14
CSMD3-205ENST00000462254 KMT2DO14686 5537 aa1.7□□□□□ -2.14
CSMD3-205ENST00000462254 KRTAP19-7Q3SYF9 63 aa1.68□□□□□ -2.14
CSMD3-205ENST00000462254 KRTAP12-4P60329 112 aa1.67□□□□□ -2.14
CSMD3-205ENST00000462254 KRTAP19-5Q3LI72 72 aa1.67□□□□□ -2.14
CSMD3-205ENST00000462254 MACF1Q9UPN3 7388 aaKnown RBP1.66□□□□□ -2.14
CSMD3-205ENST00000462254 SPRR2FQ96RM1 72 aa1.65□□□□□ -2.15
CSMD3-205ENST00000462254 MT1EP04732 61 aa1.64□□□□□ -2.15
CSMD3-205ENST00000462254 KRTAP12-3P60328 96 aa1.64□□□□□ -2.15
CSMD3-205ENST00000462254 KRTAP5-7Q6L8G8 165 aa1.64□□□□□ -2.15
CSMD3-205ENST00000462254 MT1LQ93083 61 aa1.61□□□□□ -2.15
CSMD3-205ENST00000462254 MUC12Q9UKN1 5478 aa1.6□□□□□ -2.15
CSMD3-205ENST00000462254 SPRR2EP22531 72 aa1.59□□□□□ -2.15
CSMD3-205ENST00000462254 SPRR2BP35325 72 aa1.59□□□□□ -2.15
CSMD3-205ENST00000462254 SPRR2AP35326 72 aa1.59□□□□□ -2.15
CSMD3-205ENST00000462254 KRTAP19-3Q7Z4W3 81 aa1.59□□□□□ -2.15
CSMD3-205ENST00000462254 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
CSMD3-205ENST00000462254 SYNE2Q8WXH0 6885 aaKnown RBP1.58□□□□□ -2.16
CSMD3-205ENST00000462254 MT1GP13640 62 aa1.56□□□□□ -2.16
CSMD3-205ENST00000462254 MT1MQ8N339 61 aa1.56□□□□□ -2.16
CSMD3-205ENST00000462254 SPRR2DP22532 72 aa1.53□□□□□ -2.16
CSMD3-205ENST00000462254 KRTAP5-8O75690 187 aa1.52□□□□□ -2.17
CSMD3-205ENST00000462254 MDN1Q9NU22 5596 aa1.51□□□□□ -2.17
CSMD3-205ENST00000462254 HMCN1Q96RW7 5635 aa1.46□□□□□ -2.18
CSMD3-205ENST00000462254 KRTAP2-3P0C7H8 128 aa1.45□□□□□ -2.18
CSMD3-205ENST00000462254 KRTAP20-1Q3LI63 56 aa1.45□□□□□ -2.18
CSMD3-205ENST00000462254 KRTAP2-4Q9BYR9 128 aa1.45□□□□□ -2.18
CSMD3-205ENST00000462254 DSTQ03001 7570 aaKnown RBP1.45□□□□□ -2.18
CSMD3-205ENST00000462254 NEBP20929 6669 aa1.44□□□□□ -2.18
CSMD3-205ENST00000462254 KRTAP2-1Q9BYU5 128 aa1.42□□□□□ -2.18
CSMD3-205ENST00000462254 KRTAP21-2Q3LI59 83 aa1.4□□□□□ -2.19
CSMD3-205ENST00000462254 MT1AP04731 61 aa1.37□□□□□ -2.19
CSMD3-205ENST00000462254 KRTAP6-1Q3LI64 71 aa1.36□□□□□ -2.19
CSMD3-205ENST00000462254 MT4P47944 62 aa1.33□□□□□ -2.2
CSMD3-205ENST00000462254 SYNE1Q8NF91 8797 aaKnown RBP1.33□□□□□ -2.2
CSMD3-205ENST00000462254 KRTAP20-2Q3LI61 65 aa1.29□□□□□ -2.2
CSMD3-205ENST00000462254 KRTAP6-2Q3LI66 62 aa1.25□□□□□ -2.21
CSMD3-205ENST00000462254 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
CSMD3-205ENST00000462254 AHNAK2Q8IVF2 5795 aa1.13□□□□□ -2.23
CSMD3-205ENST00000462254 PRM1P04553 51 aa0.97□□□□□ -2.25
CSMD3-205ENST00000462254 MUC5ACP98088 5654 aa0.96□□□□□ -2.26
CSMD3-205ENST00000462254 GPR98Q8WXG9 6306 aa0.96□□□□□ -2.26
CSMD3-205ENST00000462254 MUC5BQ9HC84 5762 aaPredicted RBP0.89□□□□□ -2.27
CSMD3-205ENST00000462254 AHNAKQ09666 5890 aaKnown RBP0.8□□□□□ -2.28
CSMD3-205ENST00000462254 PHGR1C9JFL3 82 aa0.77□□□□□ -2.29
CSMD3-205ENST00000462254 KRTAP21-1Q3LI58 79 aa0.7□□□□□ -2.3
CSMD3-205ENST00000462254 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 60.1 ms