RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 LCE1DQ5T752 114 aa6.64□□□□□ -1.35
VARS-220ENST00000461874 LCE4AQ5TA78 99 aa6.62□□□□□ -1.35
VARS-220ENST00000461874 KRTAP4-3Q9BYR4 195 aa6.58□□□□□ -1.36
VARS-220ENST00000461874 LINC01558Q9Y6Z2 57 aa6.58□□□□□ -1.36
VARS-220ENST00000461874 HMCN1Q96RW7 5635 aa6.55□□□□□ -1.36
VARS-220ENST00000461874 MT4P47944 62 aa6.55□□□□□ -1.36
VARS-220ENST00000461874 KRTAP5-4Q6L8H1 288 aa6.49□□□□□ -1.37
VARS-220ENST00000461874 RPS28P62857 69 aaKnown RBP6.48□□□□□ -1.37
VARS-220ENST00000461874 KRTAP12-3P60328 96 aa6.45□□□□□ -1.38
VARS-220ENST00000461874 UQCR11O14957 56 aa6.43□□□□□ -1.38
VARS-220ENST00000461874 KRTAP4-7Q9BYR0 210 aa6.4□□□□□ -1.38
VARS-220ENST00000461874 KRTAP4-6Q9BYQ5 205 aa6.37□□□□□ -1.39
VARS-220ENST00000461874 AHNAK2Q8IVF2 5795 aa6.35□□□□□ -1.39
VARS-220ENST00000461874 V9GYY9 64 aa6.29□□□□□ -1.4
VARS-220ENST00000461874 MIR22HGQ0VDD5 57 aa6.27□□□□□ -1.41
VARS-220ENST00000461874 KRTAP25-1Q3LHN0 102 aa6.27□□□□□ -1.41
VARS-220ENST00000461874 KRTAP5-10Q6L8G5 202 aa6.23□□□□□ -1.41
VARS-220ENST00000461874 KRTAP5-5Q701N2 237 aaPredicted RBP6.19□□□□□ -1.42
VARS-220ENST00000461874 Q1T7F1 81 aa6.18□□□□□ -1.42
VARS-220ENST00000461874 K7ERS5 55 aa6.17□□□□□ -1.42
VARS-220ENST00000461874 KRTAP20-2Q3LI61 65 aa6.12□□□□□ -1.43
VARS-220ENST00000461874 KRTAP19-4Q3LI73 84 aa6.1□□□□□ -1.43
VARS-220ENST00000461874 SPRR5A0A1B0GTR4 108 aa6.09□□□□□ -1.43
VARS-220ENST00000461874 PSPHP1O15172 72 aa6.09□□□□□ -1.43
VARS-220ENST00000461874 LOC100996750A0A140TA64 210 aa6.07□□□□□ -1.44
VARS-220ENST00000461874 KRTAP5-3Q6L8H2 238 aa6.06□□□□□ -1.44
VARS-220ENST00000461874 KRTAP23-1A1A580 65 aa6.05□□□□□ -1.44
VARS-220ENST00000461874 KRTAP12-4P60329 112 aa6.05□□□□□ -1.44
VARS-220ENST00000461874 SYNE1Q8NF91 8797 aaKnown RBP6.01□□□□□ -1.45
VARS-220ENST00000461874 KRTAP15-1Q3LI76 137 aa6□□□□□ -1.45
VARS-220ENST00000461874 KRTAP5-7Q6L8G8 165 aa6□□□□□ -1.45
VARS-220ENST00000461874 A6NED7 52 aa5.94□□□□□ -1.46
VARS-220ENST00000461874 LCE3CQ5T5A8 94 aa5.94□□□□□ -1.46
VARS-220ENST00000461874 BRK1Q8WUW1 75 aa5.84□□□□□ -1.47
VARS-220ENST00000461874 CDC42SE1Q9NRR8 79 aa5.83□□□□□ -1.48
VARS-220ENST00000461874 ROMO1P60602 79 aa5.74□□□□□ -1.49
VARS-220ENST00000461874 MT1AP04731 61 aa5.73□□□□□ -1.49
VARS-220ENST00000461874 KRTAP6-1Q3LI64 71 aa5.71□□□□□ -1.5
VARS-220ENST00000461874 PRO0628Q9UI54 55 aa5.71□□□□□ -1.5
VARS-220ENST00000461874 KRTAP5-2Q701N4 177 aa5.67□□□□□ -1.5
VARS-220ENST00000461874 KRTAP4-11Q9BYQ6 195 aa5.62□□□□□ -1.51
VARS-220ENST00000461874 KRTAP9-6A8MVA2 160 aa5.61□□□□□ -1.51
VARS-220ENST00000461874 PMAIP1Q13794 54 aa5.56□□□□□ -1.52
VARS-220ENST00000461874 KRTAP9-4Q9BYQ2 154 aa5.56□□□□□ -1.52
VARS-220ENST00000461874 KRTAP6-2Q3LI66 62 aa5.47□□□□□ -1.53
VARS-220ENST00000461874 KRTAP5-8O75690 187 aa5.43□□□□□ -1.54
VARS-220ENST00000461874 OBSCNQ5VST9 7968 aa5.34□□□□□ -1.55
VARS-220ENST00000461874 KTN1-AS1Q86SY8 53 aa5.28□□□□□ -1.56
VARS-220ENST00000461874 AHNAKQ09666 5890 aaKnown RBP5.25□□□□□ -1.57
VARS-220ENST00000461874 MUC5BQ9HC84 5762 aaPredicted RBP5.25□□□□□ -1.57
VARS-220ENST00000461874 MT3P25713 68 aa5.25□□□□□ -1.57
VARS-220ENST00000461874 MUC5ACP98088 5654 aa5.22□□□□□ -1.57
VARS-220ENST00000461874 KRTAP9-9Q9BYP9 154 aa5.16□□□□□ -1.58
VARS-220ENST00000461874 SVIPQ8NHG7 77 aa5.13□□□□□ -1.59
VARS-220ENST00000461874 KRTAP5-1Q6L8H4 278 aa5.1□□□□□ -1.59
VARS-220ENST00000461874 PRAC1Q96KF2 57 aa5.06□□□□□ -1.6
VARS-220ENST00000461874 LCE1EQ5T753 118 aa4.85□□□□□ -1.63
VARS-220ENST00000461874 KRTAP4-2Q9BYR5 136 aa4.59□□□□□ -1.67
VARS-220ENST00000461874 LCE1BQ5T7P3 118 aa4.56□□□□□ -1.68
VARS-220ENST00000461874 LCE1CQ5T751 118 aa4.5□□□□□ -1.69
VARS-220ENST00000461874 LUZP6Q538Z0 58 aa4.37□□□□□ -1.71
VARS-220ENST00000461874 LCE3DQ9BYE3 92 aa4.25□□□□□ -1.73
VARS-220ENST00000461874 KRTAP4-12Q9BQ66 201 aa4.19□□□□□ -1.74
VARS-220ENST00000461874 NDUFAF8A1L188 74 aa4.09□□□□□ -1.75
VARS-220ENST00000461874 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.09□□□□□ -1.75
VARS-220ENST00000461874 KRTAP5-11Q6L8G4 156 aa4.08□□□□□ -1.76
VARS-220ENST00000461874 LCE1FQ5T754 118 aa4□□□□□ -1.77
VARS-220ENST00000461874 LCE3EQ5T5B0 92 aa3.98□□□□□ -1.77
VARS-220ENST00000461874 KRTAP21-2Q3LI59 83 aa3.77□□□□□ -1.81
VARS-220ENST00000461874 A0A0A0MQY5 61 aa3.76□□□□□ -1.81
VARS-220ENST00000461874 PHGR1C9JFL3 82 aa3.62□□□□□ -1.83
VARS-220ENST00000461874 H3BS24 57 aa3.56□□□□□ -1.84
VARS-220ENST00000461874 INE1O15225 51 aa3.49□□□□□ -1.85
VARS-220ENST00000461874 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.86
VARS-220ENST00000461874 MUC19Q7Z5P9 8384 aa3.32□□□□□ -1.88
VARS-220ENST00000461874 PRM1P04553 51 aa2.92□□□□□ -1.94
VARS-220ENST00000461874 KRTAP21-1Q3LI58 79 aa2.75□□□□□ -1.97
VARS-220ENST00000461874 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 62.8 ms