RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 LCE3AQ5TA76 89 aa4.96□□□□□ -1.62
USP4-206ENST00000461553 MT1LQ93083 61 aa4.96□□□□□ -1.62
USP4-206ENST00000461553 C10orf95Q9H7T3 257 aa4.95□□□□□ -1.62
USP4-206ENST00000461553 HMCN1Q96RW7 5635 aa4.9□□□□□ -1.63
USP4-206ENST00000461553 LCE1DQ5T752 114 aa4.89□□□□□ -1.63
USP4-206ENST00000461553 LCE4AQ5TA78 99 aa4.88□□□□□ -1.63
USP4-206ENST00000461553 LINC01558Q9Y6Z2 57 aa4.87□□□□□ -1.63
USP4-206ENST00000461553 MT4P47944 62 aa4.84□□□□□ -1.63
USP4-206ENST00000461553 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
USP4-206ENST00000461553 UQCR11O14957 56 aa4.8□□□□□ -1.64
USP4-206ENST00000461553 AHNAK2Q8IVF2 5795 aa4.78□□□□□ -1.64
USP4-206ENST00000461553 KRTAP12-3P60328 96 aa4.78□□□□□ -1.64
USP4-206ENST00000461553 KRTAP5-4Q6L8H1 288 aa4.76□□□□□ -1.65
USP4-206ENST00000461553 Q1T7F1 81 aa4.74□□□□□ -1.65
USP4-206ENST00000461553 KRTAP4-12Q9BQ66 201 aa4.73□□□□□ -1.65
USP4-206ENST00000461553 KRTAP4-7Q9BYR0 210 aa4.69□□□□□ -1.66
USP4-206ENST00000461553 V9GYY9 64 aa4.69□□□□□ -1.66
USP4-206ENST00000461553 MIR22HGQ0VDD5 57 aa4.68□□□□□ -1.66
USP4-206ENST00000461553 KRTAP25-1Q3LHN0 102 aa4.66□□□□□ -1.66
USP4-206ENST00000461553 K7ERS5 55 aa4.65□□□□□ -1.67
USP4-206ENST00000461553 SVIPQ8NHG7 77 aa4.62□□□□□ -1.67
USP4-206ENST00000461553 PSPHP1O15172 72 aa4.57□□□□□ -1.68
USP4-206ENST00000461553 KRTAP5-10Q6L8G5 202 aa4.57□□□□□ -1.68
USP4-206ENST00000461553 KRTAP9-9Q9BYP9 154 aa4.57□□□□□ -1.68
USP4-206ENST00000461553 KRTAP9-4Q9BYQ2 154 aa4.57□□□□□ -1.68
USP4-206ENST00000461553 PRO0628Q9UI54 55 aa4.55□□□□□ -1.68
USP4-206ENST00000461553 KRTAP5-5Q701N2 237 aaPredicted RBP4.54□□□□□ -1.68
USP4-206ENST00000461553 KRTAP20-2Q3LI61 65 aa4.51□□□□□ -1.69
USP4-206ENST00000461553 BRK1Q8WUW1 75 aa4.51□□□□□ -1.69
USP4-206ENST00000461553 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
USP4-206ENST00000461553 KRTAP19-4Q3LI73 84 aa4.49□□□□□ -1.69
USP4-206ENST00000461553 SPRR5A0A1B0GTR4 108 aa4.48□□□□□ -1.69
USP4-206ENST00000461553 KRTAP12-4P60329 112 aa4.47□□□□□ -1.69
USP4-206ENST00000461553 KRTAP23-1A1A580 65 aa4.46□□□□□ -1.7
USP4-206ENST00000461553 KRTAP5-3Q6L8H2 238 aa4.46□□□□□ -1.7
USP4-206ENST00000461553 A6NED7 52 aa4.43□□□□□ -1.7
USP4-206ENST00000461553 KRTAP15-1Q3LI76 137 aa4.43□□□□□ -1.7
USP4-206ENST00000461553 CDC42SE1Q9NRR8 79 aa4.42□□□□□ -1.7
USP4-206ENST00000461553 KRTAP5-7Q6L8G8 165 aa4.4□□□□□ -1.71
USP4-206ENST00000461553 LCE3CQ5T5A8 94 aa4.37□□□□□ -1.71
USP4-206ENST00000461553 PMAIP1Q13794 54 aa4.29□□□□□ -1.72
USP4-206ENST00000461553 ROMO1P60602 79 aa4.27□□□□□ -1.73
USP4-206ENST00000461553 H3BS24 57 aa4.26□□□□□ -1.73
USP4-206ENST00000461553 MT1AP04731 61 aa4.23□□□□□ -1.73
USP4-206ENST00000461553 KRTAP6-1Q3LI64 71 aa4.2□□□□□ -1.74
USP4-206ENST00000461553 KTN1-AS1Q86SY8 53 aa4.18□□□□□ -1.74
USP4-206ENST00000461553 KRTAP5-2Q701N4 177 aa4.16□□□□□ -1.74
USP4-206ENST00000461553 KRTAP4-2Q9BYR5 136 aa4.15□□□□□ -1.75
USP4-206ENST00000461553 KRTAP4-11Q9BYQ6 195 aa4.13□□□□□ -1.75
USP4-206ENST00000461553 KRTAP9-6A8MVA2 160 aa4.1□□□□□ -1.75
USP4-206ENST00000461553 KRTAP6-2Q3LI66 62 aa4.02□□□□□ -1.77
USP4-206ENST00000461553 OBSCNQ5VST9 7968 aa4.01□□□□□ -1.77
USP4-206ENST00000461553 PRAC1Q96KF2 57 aa3.99□□□□□ -1.77
USP4-206ENST00000461553 KRTAP5-8O75690 187 aa3.98□□□□□ -1.77
USP4-206ENST00000461553 AHNAKQ09666 5890 aaKnown RBP3.95□□□□□ -1.78
USP4-206ENST00000461553 MUC5BQ9HC84 5762 aaPredicted RBP3.93□□□□□ -1.78
USP4-206ENST00000461553 MUC5ACP98088 5654 aa3.9□□□□□ -1.78
USP4-206ENST00000461553 MT3P25713 68 aa3.87□□□□□ -1.79
USP4-206ENST00000461553 KRTAP5-1Q6L8H4 278 aa3.73□□□□□ -1.81
USP4-206ENST00000461553 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
USP4-206ENST00000461553 LCE1BQ5T7P3 118 aa3.37□□□□□ -1.87
USP4-206ENST00000461553 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
USP4-206ENST00000461553 NDUFAF8A1L188 74 aa3.26□□□□□ -1.89
USP4-206ENST00000461553 LUZP6Q538Z0 58 aa3.19□□□□□ -1.9
USP4-206ENST00000461553 LCE3DQ9BYE3 92 aa3.14□□□□□ -1.91
USP4-206ENST00000461553 KRTAP5-11Q6L8G4 156 aa3.02□□□□□ -1.93
USP4-206ENST00000461553 KRTAP5-6Q6L8G9 129 aaPredicted RBP3□□□□□ -1.93
USP4-206ENST00000461553 LCE3EQ5T5B0 92 aa2.95□□□□□ -1.94
USP4-206ENST00000461553 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
USP4-206ENST00000461553 A0A0A0MQY5 61 aa2.91□□□□□ -1.94
USP4-206ENST00000461553 KRTAP21-2Q3LI59 83 aa2.75□□□□□ -1.97
USP4-206ENST00000461553 INE1O15225 51 aa2.73□□□□□ -1.97
USP4-206ENST00000461553 PHGR1C9JFL3 82 aa2.69□□□□□ -1.98
USP4-206ENST00000461553 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
USP4-206ENST00000461553 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
USP4-206ENST00000461553 PRM1P04553 51 aa2.19□□□□□ -2.06
USP4-206ENST00000461553 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
USP4-206ENST00000461553 MUC16Q8WXI7 14507 aa1.81□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 52 ms