RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 LCE3AQ5TA76 89 aa5.59□□□□□ -1.51
VARS-219ENST00000461328 PSPHP1O15172 72 aa5.54□□□□□ -1.52
VARS-219ENST00000461328 MT1GP13640 62 aa5.53□□□□□ -1.52
VARS-219ENST00000461328 DSTQ03001 7570 aaKnown RBP5.52□□□□□ -1.53
VARS-219ENST00000461328 K7ERS5 55 aa5.52□□□□□ -1.53
VARS-219ENST00000461328 PMAIP1Q13794 54 aa5.52□□□□□ -1.53
VARS-219ENST00000461328 PP632Q6XCG6 107 aa5.52□□□□□ -1.53
VARS-219ENST00000461328 MT1LQ93083 61 aa5.48□□□□□ -1.53
VARS-219ENST00000461328 MT1MQ8N339 61 aa5.45□□□□□ -1.54
VARS-219ENST00000461328 KRTAP4-9Q9BYQ8 210 aa5.44□□□□□ -1.54
VARS-219ENST00000461328 A6NED7 52 aa5.39□□□□□ -1.55
VARS-219ENST00000461328 KRTAP25-1Q3LHN0 102 aa5.39□□□□□ -1.55
VARS-219ENST00000461328 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
VARS-219ENST00000461328 H3BS24 57 aa5.35□□□□□ -1.55
VARS-219ENST00000461328 BRK1Q8WUW1 75 aa5.33□□□□□ -1.56
VARS-219ENST00000461328 LCE1DQ5T752 114 aa5.31□□□□□ -1.56
VARS-219ENST00000461328 KRTAP4-3Q9BYR4 195 aa5.31□□□□□ -1.56
VARS-219ENST00000461328 LCE4AQ5TA78 99 aa5.3□□□□□ -1.56
VARS-219ENST00000461328 GPR98Q8WXG9 6306 aa5.3□□□□□ -1.56
VARS-219ENST00000461328 MT4P47944 62 aa5.26□□□□□ -1.57
VARS-219ENST00000461328 KTN1-AS1Q86SY8 53 aa5.25□□□□□ -1.57
VARS-219ENST00000461328 CDC42SE1Q9NRR8 79 aa5.22□□□□□ -1.57
VARS-219ENST00000461328 KRTAP4-7Q9BYR0 210 aa5.21□□□□□ -1.58
VARS-219ENST00000461328 KRTAP5-4Q6L8H1 288 aa5.18□□□□□ -1.58
VARS-219ENST00000461328 HMCN1Q96RW7 5635 aa5.17□□□□□ -1.58
VARS-219ENST00000461328 KRTAP23-1A1A580 65 aa5.15□□□□□ -1.59
VARS-219ENST00000461328 ROMO1P60602 79 aa5.11□□□□□ -1.59
VARS-219ENST00000461328 KRTAP4-6Q9BYQ5 205 aa5.09□□□□□ -1.59
VARS-219ENST00000461328 A0A0A0MQY5 61 aa5.07□□□□□ -1.6
VARS-219ENST00000461328 KRTAP15-1Q3LI76 137 aa5.06□□□□□ -1.6
VARS-219ENST00000461328 KRTAP19-4Q3LI73 84 aa5.03□□□□□ -1.6
VARS-219ENST00000461328 AHNAK2Q8IVF2 5795 aa5□□□□□ -1.61
VARS-219ENST00000461328 KRTAP5-5Q701N2 237 aaPredicted RBP4.98□□□□□ -1.61
VARS-219ENST00000461328 LCE3CQ5T5A8 94 aa4.95□□□□□ -1.62
VARS-219ENST00000461328 LOC100996750A0A140TA64 210 aa4.94□□□□□ -1.62
VARS-219ENST00000461328 KRTAP5-10Q6L8G5 202 aa4.93□□□□□ -1.62
VARS-219ENST00000461328 KRTAP20-2Q3LI61 65 aa4.91□□□□□ -1.62
VARS-219ENST00000461328 KRTAP12-4P60329 112 aa4.89□□□□□ -1.63
VARS-219ENST00000461328 SPRR5A0A1B0GTR4 108 aa4.88□□□□□ -1.63
VARS-219ENST00000461328 KRTAP5-3Q6L8H2 238 aa4.82□□□□□ -1.64
VARS-219ENST00000461328 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
VARS-219ENST00000461328 KRTAP5-7Q6L8G8 165 aa4.73□□□□□ -1.65
VARS-219ENST00000461328 MT1AP04731 61 aa4.67□□□□□ -1.66
VARS-219ENST00000461328 KRTAP9-6A8MVA2 160 aa4.63□□□□□ -1.67
VARS-219ENST00000461328 KRTAP6-1Q3LI64 71 aa4.63□□□□□ -1.67
VARS-219ENST00000461328 KRTAP5-2Q701N4 177 aa4.54□□□□□ -1.68
VARS-219ENST00000461328 PRAC1Q96KF2 57 aa4.49□□□□□ -1.69
VARS-219ENST00000461328 KRTAP9-4Q9BYQ2 154 aa4.49□□□□□ -1.69
VARS-219ENST00000461328 KRTAP4-11Q9BYQ6 195 aa4.48□□□□□ -1.69
VARS-219ENST00000461328 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
VARS-219ENST00000461328 LUZP6Q538Z0 58 aa4.42□□□□□ -1.7
VARS-219ENST00000461328 KRTAP5-8O75690 187 aa4.32□□□□□ -1.72
VARS-219ENST00000461328 MT3P25713 68 aa4.28□□□□□ -1.72
VARS-219ENST00000461328 OBSCNQ5VST9 7968 aa4.2□□□□□ -1.74
VARS-219ENST00000461328 NDUFAF8A1L188 74 aa4.19□□□□□ -1.74
VARS-219ENST00000461328 KRTAP9-9Q9BYP9 154 aa4.13□□□□□ -1.75
VARS-219ENST00000461328 MUC5ACP98088 5654 aa4.12□□□□□ -1.75
VARS-219ENST00000461328 AHNAKQ09666 5890 aaKnown RBP4.1□□□□□ -1.75
VARS-219ENST00000461328 KRTAP5-1Q6L8H4 278 aa4.07□□□□□ -1.76
VARS-219ENST00000461328 MUC5BQ9HC84 5762 aaPredicted RBP4.06□□□□□ -1.76
VARS-219ENST00000461328 LCE1EQ5T753 118 aa3.9□□□□□ -1.79
VARS-219ENST00000461328 INE1O15225 51 aa3.72□□□□□ -1.81
VARS-219ENST00000461328 LCE1BQ5T7P3 118 aa3.71□□□□□ -1.82
VARS-219ENST00000461328 KRTAP4-2Q9BYR5 136 aa3.68□□□□□ -1.82
VARS-219ENST00000461328 LCE1CQ5T751 118 aa3.62□□□□□ -1.83
VARS-219ENST00000461328 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
VARS-219ENST00000461328 LCE3EQ5T5B0 92 aa3.4□□□□□ -1.87
VARS-219ENST00000461328 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
VARS-219ENST00000461328 KRTAP5-11Q6L8G4 156 aa3.28□□□□□ -1.88
VARS-219ENST00000461328 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
VARS-219ENST00000461328 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
VARS-219ENST00000461328 KRTAP21-2Q3LI59 83 aa3.03□□□□□ -1.92
VARS-219ENST00000461328 PHGR1C9JFL3 82 aa2.89□□□□□ -1.95
VARS-219ENST00000461328 KRTAP4-4Q9BYR3 166 aa2.8□□□□□ -1.96
VARS-219ENST00000461328 PRM1P04553 51 aa2.63□□□□□ -1.99
VARS-219ENST00000461328 MUC19Q7Z5P9 8384 aa2.59□□□□□ -2
VARS-219ENST00000461328 KRTAP21-1Q3LI58 79 aa2.19□□□□□ -2.06
VARS-219ENST00000461328 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 131.4 ms