RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 ANAPC13Q9BS18 74 aa7.85□□□□□ -1.15
PTPN4-207ENST00000460162 PRR15LQ9BU68 103 aa7.84□□□□□ -1.15
PTPN4-207ENST00000460162 AHNAK2Q8IVF2 5795 aa7.79□□□□□ -1.16
PTPN4-207ENST00000460162 ATP5EP56381 51 aaPredicted RBP7.75□□□□□ -1.17
PTPN4-207ENST00000460162 KRTAP12-3P60328 96 aa7.71□□□□□ -1.18
PTPN4-207ENST00000460162 KRTAP4-6Q9BYQ5 205 aa7.7□□□□□ -1.18
PTPN4-207ENST00000460162 CCDC179H3BU77 68 aa7.68□□□□□ -1.18
PTPN4-207ENST00000460162 LINC01558Q9Y6Z2 57 aa7.68□□□□□ -1.18
PTPN4-207ENST00000460162 KRTAP4-7Q9BYR0 210 aa7.64□□□□□ -1.19
PTPN4-207ENST00000460162 KRTAP5-10Q6L8G5 202 aa7.63□□□□□ -1.19
PTPN4-207ENST00000460162 UQCR11O14957 56 aa7.56□□□□□ -1.2
PTPN4-207ENST00000460162 KRTAP5-5Q701N2 237 aaPredicted RBP7.48□□□□□ -1.21
PTPN4-207ENST00000460162 KRTAP25-1Q3LHN0 102 aa7.45□□□□□ -1.22
PTPN4-207ENST00000460162 KRTAP20-2Q3LI61 65 aa7.44□□□□□ -1.22
PTPN4-207ENST00000460162 TMEM258P61165 79 aa7.43□□□□□ -1.22
PTPN4-207ENST00000460162 KRTAP5-3Q6L8H2 238 aa7.41□□□□□ -1.22
PTPN4-207ENST00000460162 SPRR5A0A1B0GTR4 108 aa7.4□□□□□ -1.22
PTPN4-207ENST00000460162 KRTAP5-7Q6L8G8 165 aa7.38□□□□□ -1.23
PTPN4-207ENST00000460162 MIR22HGQ0VDD5 57 aa7.35□□□□□ -1.23
PTPN4-207ENST00000460162 KRTAP12-4P60329 112 aa7.32□□□□□ -1.24
PTPN4-207ENST00000460162 KRTAP19-4Q3LI73 84 aa7.3□□□□□ -1.24
PTPN4-207ENST00000460162 K7ERS5 55 aa7.28□□□□□ -1.24
PTPN4-207ENST00000460162 SYNE1Q8NF91 8797 aaKnown RBP7.26□□□□□ -1.25
PTPN4-207ENST00000460162 LOC100996750A0A140TA64 210 aa7.25□□□□□ -1.25
PTPN4-207ENST00000460162 KRTAP23-1A1A580 65 aa7.16□□□□□ -1.26
PTPN4-207ENST00000460162 KRTAP15-1Q3LI76 137 aa7.13□□□□□ -1.27
PTPN4-207ENST00000460162 V9GYY9 64 aa7.09□□□□□ -1.27
PTPN4-207ENST00000460162 PSPHP1O15172 72 aa7.06□□□□□ -1.28
PTPN4-207ENST00000460162 LCE3CQ5T5A8 94 aa7.06□□□□□ -1.28
PTPN4-207ENST00000460162 Q1T7F1 81 aa7□□□□□ -1.29
PTPN4-207ENST00000460162 MT1AP04731 61 aa6.9□□□□□ -1.3
PTPN4-207ENST00000460162 KRTAP5-2Q701N4 177 aa6.87□□□□□ -1.31
PTPN4-207ENST00000460162 CDC42SE1Q9NRR8 79 aa6.87□□□□□ -1.31
PTPN4-207ENST00000460162 KRTAP6-1Q3LI64 71 aa6.84□□□□□ -1.31
PTPN4-207ENST00000460162 A6NED7 52 aa6.83□□□□□ -1.32
PTPN4-207ENST00000460162 KRTAP4-11Q9BYQ6 195 aa6.83□□□□□ -1.32
PTPN4-207ENST00000460162 ROMO1P60602 79 aa6.72□□□□□ -1.33
PTPN4-207ENST00000460162 RPS28P62857 69 aaKnown RBP6.72□□□□□ -1.33
PTPN4-207ENST00000460162 KRTAP9-6A8MVA2 160 aa6.66□□□□□ -1.34
PTPN4-207ENST00000460162 KRTAP9-4Q9BYQ2 154 aa6.66□□□□□ -1.34
PTPN4-207ENST00000460162 KRTAP5-8O75690 187 aa6.61□□□□□ -1.35
PTPN4-207ENST00000460162 KRTAP6-2Q3LI66 62 aa6.58□□□□□ -1.36
PTPN4-207ENST00000460162 OBSCNQ5VST9 7968 aa6.51□□□□□ -1.37
PTPN4-207ENST00000460162 MUC5ACP98088 5654 aa6.47□□□□□ -1.37
PTPN4-207ENST00000460162 AHNAKQ09666 5890 aaKnown RBP6.46□□□□□ -1.37
PTPN4-207ENST00000460162 MUC5BQ9HC84 5762 aaPredicted RBP6.45□□□□□ -1.38
PTPN4-207ENST00000460162 MT3P25713 68 aa6.31□□□□□ -1.4
PTPN4-207ENST00000460162 PCP4P48539 62 aa6.31□□□□□ -1.4
PTPN4-207ENST00000460162 KRTAP9-9Q9BYP9 154 aa6.3□□□□□ -1.4
PTPN4-207ENST00000460162 KRTAP5-1Q6L8H4 278 aa6.18□□□□□ -1.42
PTPN4-207ENST00000460162 LCE1EQ5T753 118 aa5.86□□□□□ -1.47
PTPN4-207ENST00000460162 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
PTPN4-207ENST00000460162 KRTAP4-2Q9BYR5 136 aa5.54□□□□□ -1.52
PTPN4-207ENST00000460162 LCE1BQ5T7P3 118 aa5.49□□□□□ -1.53
PTPN4-207ENST00000460162 LCE1CQ5T751 118 aa5.44□□□□□ -1.54
PTPN4-207ENST00000460162 PMAIP1Q13794 54 aa5.19□□□□□ -1.58
PTPN4-207ENST00000460162 PRAC1Q96KF2 57 aa5.07□□□□□ -1.6
PTPN4-207ENST00000460162 LCE3DQ9BYE3 92 aa5.05□□□□□ -1.6
PTPN4-207ENST00000460162 KRTAP4-12Q9BQ66 201 aa5.04□□□□□ -1.6
PTPN4-207ENST00000460162 KRTAP5-11Q6L8G4 156 aa4.97□□□□□ -1.61
PTPN4-207ENST00000460162 PRO0628Q9UI54 55 aa4.96□□□□□ -1.62
PTPN4-207ENST00000460162 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.94□□□□□ -1.62
PTPN4-207ENST00000460162 LCE1FQ5T754 118 aa4.87□□□□□ -1.63
PTPN4-207ENST00000460162 LCE3EQ5T5B0 92 aa4.71□□□□□ -1.66
PTPN4-207ENST00000460162 KTN1-AS1Q86SY8 53 aa4.68□□□□□ -1.66
PTPN4-207ENST00000460162 KRTAP21-2Q3LI59 83 aa4.52□□□□□ -1.69
PTPN4-207ENST00000460162 SVIPQ8NHG7 77 aa4.49□□□□□ -1.69
PTPN4-207ENST00000460162 PHGR1C9JFL3 82 aa4.45□□□□□ -1.7
PTPN4-207ENST00000460162 LUZP6Q538Z0 58 aa4.37□□□□□ -1.71
PTPN4-207ENST00000460162 KRTAP4-4Q9BYR3 166 aa4.12□□□□□ -1.75
PTPN4-207ENST00000460162 MUC19Q7Z5P9 8384 aa4.01□□□□□ -1.77
PTPN4-207ENST00000460162 NDUFAF8A1L188 74 aa3.54□□□□□ -1.84
PTPN4-207ENST00000460162 PRM1P04553 51 aa3.41□□□□□ -1.86
PTPN4-207ENST00000460162 KRTAP21-1Q3LI58 79 aa3.4□□□□□ -1.87
PTPN4-207ENST00000460162 A0A0A0MQY5 61 aa2.94□□□□□ -1.94
PTPN4-207ENST00000460162 INE1O15225 51 aa2.87□□□□□ -1.95
PTPN4-207ENST00000460162 MUC16Q8WXI7 14507 aa2.84□□□□□ -1.95
PTPN4-207ENST00000460162 H3BS24 57 aa2.55□□□□□ -2
Retrieved 78 of 20,778 RNA–protein pairs in 136.3 ms