RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SSPOA2VEC9 5147 aa3.57□□□□□ -1.84
VPS50-208ENST00000458707 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
VPS50-208ENST00000458707 SYNE2Q8WXH0 6885 aaKnown RBP3.49□□□□□ -1.85
VPS50-208ENST00000458707 LCE3AQ5TA76 89 aa3.47□□□□□ -1.85
VPS50-208ENST00000458707 MACF1Q9UPN3 7388 aaKnown RBP3.43□□□□□ -1.86
VPS50-208ENST00000458707 KRTAP8-1Q8IUC2 63 aa3.43□□□□□ -1.86
VPS50-208ENST00000458707 KRTAP20-1Q3LI63 56 aa3.42□□□□□ -1.86
VPS50-208ENST00000458707 MT1HP80294 61 aa3.41□□□□□ -1.86
VPS50-208ENST00000458707 KRTAP19-8Q3LI54 63 aa3.41□□□□□ -1.86
VPS50-208ENST00000458707 KRTAP5-1Q6L8H4 278 aa3.41□□□□□ -1.86
VPS50-208ENST00000458707 USH2AO75445 5202 aa3.41□□□□□ -1.86
VPS50-208ENST00000458707 NEBP20929 6669 aa3.4□□□□□ -1.86
VPS50-208ENST00000458707 FCGBPQ9Y6R7 5405 aaPredicted RBP3.4□□□□□ -1.87
VPS50-208ENST00000458707 MT2AP02795 61 aa3.39□□□□□ -1.87
VPS50-208ENST00000458707 MT1FP04733 61 aa3.39□□□□□ -1.87
VPS50-208ENST00000458707 HMCN1Q96RW7 5635 aa3.38□□□□□ -1.87
VPS50-208ENST00000458707 M0R2T5 61 aa3.38□□□□□ -1.87
VPS50-208ENST00000458707 KRTAP10-10P60014 251 aa3.37□□□□□ -1.87
VPS50-208ENST00000458707 KRTAP6-3Q3LI67 103 aa3.36□□□□□ -1.87
VPS50-208ENST00000458707 KRTAP10-5P60370 271 aa3.35□□□□□ -1.87
VPS50-208ENST00000458707 MT1XP80297 61 aa3.34□□□□□ -1.87
VPS50-208ENST00000458707 MT1BP07438 61 aa3.33□□□□□ -1.88
VPS50-208ENST00000458707 KRTAP4-4Q9BYR3 166 aa3.31□□□□□ -1.88
VPS50-208ENST00000458707 KRTAP12-3P60328 96 aa3.3□□□□□ -1.88
VPS50-208ENST00000458707 KRTAP10-12P60413 245 aa3.3□□□□□ -1.88
VPS50-208ENST00000458707 MT3P25713 68 aa3.28□□□□□ -1.88
VPS50-208ENST00000458707 GPR98Q8WXG9 6306 aa3.23□□□□□ -1.89
VPS50-208ENST00000458707 MUC12Q9UKN1 5478 aa3.18□□□□□ -1.9
VPS50-208ENST00000458707 KRTAP5-2Q701N4 177 aa3.18□□□□□ -1.9
VPS50-208ENST00000458707 KRTAP2-3P0C7H8 128 aa3.17□□□□□ -1.9
VPS50-208ENST00000458707 KRTAP2-4Q9BYR9 128 aa3.17□□□□□ -1.9
VPS50-208ENST00000458707 KMT2DO14686 5537 aa3.16□□□□□ -1.9
VPS50-208ENST00000458707 LCE3CQ5T5A8 94 aa3.13□□□□□ -1.91
VPS50-208ENST00000458707 KRTAP9-6A8MVA2 160 aa3.12□□□□□ -1.91
VPS50-208ENST00000458707 KRTAP19-5Q3LI72 72 aa3.12□□□□□ -1.91
VPS50-208ENST00000458707 KRTAP19-6Q3LI70 58 aa3.05□□□□□ -1.92
VPS50-208ENST00000458707 KRTAP2-1Q9BYU5 128 aa3.03□□□□□ -1.93
VPS50-208ENST00000458707 MDN1Q9NU22 5596 aa3.01□□□□□ -1.93
VPS50-208ENST00000458707 KRTAP5-8O75690 187 aa2.99□□□□□ -1.93
VPS50-208ENST00000458707 KRTAP19-7Q3SYF9 63 aa2.98□□□□□ -1.93
VPS50-208ENST00000458707 MT1LQ93083 61 aa2.9□□□□□ -1.95
VPS50-208ENST00000458707 KRTAP4-3Q9BYR4 195 aa2.89□□□□□ -1.95
VPS50-208ENST00000458707 MT1EP04732 61 aa2.88□□□□□ -1.95
VPS50-208ENST00000458707 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
VPS50-208ENST00000458707 LCE1FQ5T754 118 aa2.84□□□□□ -1.96
VPS50-208ENST00000458707 SPRR2EP22531 72 aa2.78□□□□□ -1.96
VPS50-208ENST00000458707 SPRR2BP35325 72 aa2.78□□□□□ -1.96
VPS50-208ENST00000458707 SPRR2AP35326 72 aa2.78□□□□□ -1.96
VPS50-208ENST00000458707 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
VPS50-208ENST00000458707 SPRR2DP22532 72 aa2.7□□□□□ -1.98
VPS50-208ENST00000458707 KRTAP5-7Q6L8G8 165 aa2.7□□□□□ -1.98
VPS50-208ENST00000458707 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
VPS50-208ENST00000458707 KRTAP5-10Q6L8G5 202 aa2.69□□□□□ -1.98
VPS50-208ENST00000458707 MT1GP13640 62 aa2.68□□□□□ -1.98
VPS50-208ENST00000458707 MT1MQ8N339 61 aa2.68□□□□□ -1.98
VPS50-208ENST00000458707 KRTAP19-3Q7Z4W3 81 aa2.66□□□□□ -1.98
VPS50-208ENST00000458707 SPRR2FQ96RM1 72 aa2.65□□□□□ -1.98
VPS50-208ENST00000458707 KRTAP12-4P60329 112 aa2.62□□□□□ -1.99
VPS50-208ENST00000458707 MT1AP04731 61 aa2.53□□□□□ -2
VPS50-208ENST00000458707 KRTAP5-5Q701N2 237 aaPredicted RBP2.46□□□□□ -2.02
VPS50-208ENST00000458707 AHNAKQ09666 5890 aaKnown RBP2.45□□□□□ -2.02
VPS50-208ENST00000458707 KRTAP6-1Q3LI64 71 aa2.45□□□□□ -2.02
VPS50-208ENST00000458707 LCE3EQ5T5B0 92 aa2.43□□□□□ -2.02
VPS50-208ENST00000458707 LCE3DQ9BYE3 92 aa2.42□□□□□ -2.02
VPS50-208ENST00000458707 MT4P47944 62 aa2.39□□□□□ -2.03
VPS50-208ENST00000458707 SYNE1Q8NF91 8797 aaKnown RBP2.38□□□□□ -2.03
VPS50-208ENST00000458707 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
VPS50-208ENST00000458707 PRM1P04553 51 aa2.37□□□□□ -2.03
VPS50-208ENST00000458707 LCE1CQ5T751 118 aa2.36□□□□□ -2.03
VPS50-208ENST00000458707 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
VPS50-208ENST00000458707 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
VPS50-208ENST00000458707 KRTAP6-2Q3LI66 62 aa2.24□□□□□ -2.05
VPS50-208ENST00000458707 KRTAP20-2Q3LI61 65 aa2.09□□□□□ -2.07
VPS50-208ENST00000458707 MUC19Q7Z5P9 8384 aa1.88□□□□□ -2.11
VPS50-208ENST00000458707 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
VPS50-208ENST00000458707 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
VPS50-208ENST00000458707 PHGR1C9JFL3 82 aa1.61□□□□□ -2.15
VPS50-208ENST00000458707 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 108.5 ms