RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 KRTAP12-1P59990 96 aa2.69□□□□□ -1.98
MCF2-206ENST00000446225 KRTAP5-4Q6L8H1 288 aa2.69□□□□□ -1.98
MCF2-206ENST00000446225 MT2AP02795 61 aa2.68□□□□□ -1.98
MCF2-206ENST00000446225 MT1FP04733 61 aa2.66□□□□□ -1.98
MCF2-206ENST00000446225 HMCN1Q96RW7 5635 aa2.65□□□□□ -1.99
MCF2-206ENST00000446225 S4R3F8 94 aa2.64□□□□□ -1.99
MCF2-206ENST00000446225 KRTAP6-3Q3LI67 103 aa2.64□□□□□ -1.99
MCF2-206ENST00000446225 FSIP2Q5CZC0 6907 aa2.63□□□□□ -1.99
MCF2-206ENST00000446225 USH2AO75445 5202 aa2.61□□□□□ -1.99
MCF2-206ENST00000446225 KRTAP5-1Q6L8H4 278 aa2.6□□□□□ -1.99
MCF2-206ENST00000446225 CRCT1Q9UGL9 99 aa2.59□□□□□ -1.99
MCF2-206ENST00000446225 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
MCF2-206ENST00000446225 SSPOA2VEC9 5147 aa2.57□□□□□ -2
MCF2-206ENST00000446225 KRTAP9-6A8MVA2 160 aa2.54□□□□□ -2
MCF2-206ENST00000446225 H0YAA0 97 aa2.53□□□□□ -2
MCF2-206ENST00000446225 SPRR2GQ9BYE4 73 aa2.5□□□□□ -2.01
MCF2-206ENST00000446225 FCGBPQ9Y6R7 5405 aaPredicted RBP2.49□□□□□ -2.01
MCF2-206ENST00000446225 C10orf95Q9H7T3 257 aa2.48□□□□□ -2.01
MCF2-206ENST00000446225 MT1BP07438 61 aa2.47□□□□□ -2.01
MCF2-206ENST00000446225 KRTAP19-8Q3LI54 63 aa2.47□□□□□ -2.01
MCF2-206ENST00000446225 KRTAP19-6Q3LI70 58 aa2.46□□□□□ -2.02
MCF2-206ENST00000446225 M0QZ58 72 aa2.42□□□□□ -2.02
MCF2-206ENST00000446225 MACF1Q9UPN3 7388 aaKnown RBP2.38□□□□□ -2.03
MCF2-206ENST00000446225 KRTAP12-3P60328 96 aa2.36□□□□□ -2.03
MCF2-206ENST00000446225 SYNE2Q8WXH0 6885 aaKnown RBP2.36□□□□□ -2.03
MCF2-206ENST00000446225 KRTAP5-2Q701N4 177 aa2.36□□□□□ -2.03
MCF2-206ENST00000446225 KRTAP12-4P60329 112 aa2.34□□□□□ -2.03
MCF2-206ENST00000446225 MT1XP80297 61 aa2.34□□□□□ -2.04
MCF2-206ENST00000446225 A0A0D9SG42 100 aa2.3□□□□□ -2.04
MCF2-206ENST00000446225 KMT2DO14686 5537 aa2.25□□□□□ -2.05
MCF2-206ENST00000446225 NEBP20929 6669 aa2.23□□□□□ -2.05
MCF2-206ENST00000446225 LCE3AQ5TA76 89 aa2.22□□□□□ -2.05
MCF2-206ENST00000446225 MUC12Q9UKN1 5478 aa2.21□□□□□ -2.06
MCF2-206ENST00000446225 KRTAP8-1Q8IUC2 63 aa2.2□□□□□ -2.06
MCF2-206ENST00000446225 MDN1Q9NU22 5596 aa2.18□□□□□ -2.06
MCF2-206ENST00000446225 KRTAP4-3Q9BYR4 195 aa2.18□□□□□ -2.06
MCF2-206ENST00000446225 SPRR2FQ96RM1 72 aa2.17□□□□□ -2.06
MCF2-206ENST00000446225 SPRR2EP22531 72 aa2.12□□□□□ -2.07
MCF2-206ENST00000446225 SPRR2BP35325 72 aa2.12□□□□□ -2.07
MCF2-206ENST00000446225 SPRR2AP35326 72 aa2.12□□□□□ -2.07
MCF2-206ENST00000446225 KRTAP5-8O75690 187 aa2.11□□□□□ -2.07
MCF2-206ENST00000446225 TNP1P09430 55 aa2.09□□□□□ -2.07
MCF2-206ENST00000446225 KRTAP19-7Q3SYF9 63 aa2.09□□□□□ -2.08
MCF2-206ENST00000446225 OBSCNQ5VST9 7968 aa2.08□□□□□ -2.08
MCF2-206ENST00000446225 KRTAP19-5Q3LI72 72 aa2.07□□□□□ -2.08
MCF2-206ENST00000446225 MT1EP04732 61 aa2.07□□□□□ -2.08
MCF2-206ENST00000446225 KRTAP20-1Q3LI63 56 aa2.06□□□□□ -2.08
MCF2-206ENST00000446225 SPRR2DP22532 72 aa2.05□□□□□ -2.08
MCF2-206ENST00000446225 KRTAP2-3P0C7H8 128 aa2.04□□□□□ -2.08
MCF2-206ENST00000446225 KRTAP2-4Q9BYR9 128 aa2.04□□□□□ -2.08
MCF2-206ENST00000446225 MUC5BQ9HC84 5762 aaPredicted RBP2.04□□□□□ -2.08
MCF2-206ENST00000446225 GPR98Q8WXG9 6306 aa2.03□□□□□ -2.08
MCF2-206ENST00000446225 KRTAP5-5Q701N2 237 aaPredicted RBP2.02□□□□□ -2.09
MCF2-206ENST00000446225 KRTAP19-3Q7Z4W3 81 aa2.01□□□□□ -2.09
MCF2-206ENST00000446225 MT1LQ93083 61 aa1.99□□□□□ -2.09
MCF2-206ENST00000446225 MT1GP13640 62 aa1.98□□□□□ -2.09
MCF2-206ENST00000446225 KRTAP2-1Q9BYU5 128 aa1.98□□□□□ -2.09
MCF2-206ENST00000446225 MT1MQ8N339 61 aa1.96□□□□□ -2.1
MCF2-206ENST00000446225 DSTQ03001 7570 aaKnown RBP1.94□□□□□ -2.1
MCF2-206ENST00000446225 LCE1CQ5T751 118 aa1.83□□□□□ -2.12
MCF2-206ENST00000446225 LCE1BQ5T7P3 118 aa1.83□□□□□ -2.12
MCF2-206ENST00000446225 MT4P47944 62 aa1.79□□□□□ -2.12
MCF2-206ENST00000446225 SYNE1Q8NF91 8797 aaKnown RBP1.72□□□□□ -2.13
MCF2-206ENST00000446225 AHNAK2Q8IVF2 5795 aa1.71□□□□□ -2.14
MCF2-206ENST00000446225 MT1AP04731 61 aa1.69□□□□□ -2.14
MCF2-206ENST00000446225 KRTAP20-2Q3LI61 65 aa1.69□□□□□ -2.14
MCF2-206ENST00000446225 KRTAP6-1Q3LI64 71 aa1.68□□□□□ -2.14
MCF2-206ENST00000446225 KRTAP5-10Q6L8G5 202 aa1.6□□□□□ -2.15
MCF2-206ENST00000446225 KRTAP6-2Q3LI66 62 aa1.6□□□□□ -2.15
MCF2-206ENST00000446225 KRTAP5-7Q6L8G8 165 aa1.59□□□□□ -2.15
MCF2-206ENST00000446225 AHNAKQ09666 5890 aaKnown RBP1.51□□□□□ -2.17
MCF2-206ENST00000446225 PRM1P04553 51 aa1.48□□□□□ -2.17
MCF2-206ENST00000446225 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
MCF2-206ENST00000446225 MUC5ACP98088 5654 aa1.43□□□□□ -2.18
MCF2-206ENST00000446225 KRTAP21-2Q3LI59 83 aa1.25□□□□□ -2.21
MCF2-206ENST00000446225 KRTAP21-1Q3LI58 79 aa1.17□□□□□ -2.22
MCF2-206ENST00000446225 PHGR1C9JFL3 82 aa0.99□□□□□ -2.25
MCF2-206ENST00000446225 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 62.5 ms