RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 MT1LQ93083 61 aa5.67□□□□□ -1.5
CLCNKA-203ENST00000439316 MT1EP04732 61 aa5.66□□□□□ -1.5
CLCNKA-203ENST00000439316 KRTAP2-3P0C7H8 128 aa5.65□□□□□ -1.51
CLCNKA-203ENST00000439316 KRTAP2-4Q9BYR9 128 aa5.65□□□□□ -1.51
CLCNKA-203ENST00000439316 KRTAP2-1Q9BYU5 128 aa5.65□□□□□ -1.51
CLCNKA-203ENST00000439316 SYNE2Q8WXH0 6885 aaKnown RBP5.63□□□□□ -1.51
CLCNKA-203ENST00000439316 KRTAP9-6A0A140TA67 174 aa5.62□□□□□ -1.51
CLCNKA-203ENST00000439316 MUC12Q9UKN1 5478 aa5.56□□□□□ -1.52
CLCNKA-203ENST00000439316 SPRR2FQ96RM1 72 aa5.51□□□□□ -1.53
CLCNKA-203ENST00000439316 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.42□□□□□ -1.54
CLCNKA-203ENST00000439316 KRTAP5-9P26371 169 aa5.4□□□□□ -1.55
CLCNKA-203ENST00000439316 KRTAP19-3Q7Z4W3 81 aa5.37□□□□□ -1.55
CLCNKA-203ENST00000439316 MDN1Q9NU22 5596 aa5.34□□□□□ -1.56
CLCNKA-203ENST00000439316 MT1GP13640 62 aa5.32□□□□□ -1.56
CLCNKA-203ENST00000439316 KRTAP4-3Q9BYR4 195 aa5.31□□□□□ -1.56
CLCNKA-203ENST00000439316 LOC100996750A0A140TA64 210 aa5.29□□□□□ -1.56
CLCNKA-203ENST00000439316 KRTAP6-3Q3LI67 103 aa5.28□□□□□ -1.56
CLCNKA-203ENST00000439316 LCE5AQ5TCM9 118 aa5.28□□□□□ -1.56
CLCNKA-203ENST00000439316 MT1MQ8N339 61 aa5.28□□□□□ -1.56
CLCNKA-203ENST00000439316 LCE1AQ5T7P2 110 aa5.24□□□□□ -1.57
CLCNKA-203ENST00000439316 SPRR2EP22531 72 aa5.2□□□□□ -1.58
CLCNKA-203ENST00000439316 SPRR2BP35325 72 aa5.2□□□□□ -1.58
CLCNKA-203ENST00000439316 SPRR2AP35326 72 aa5.2□□□□□ -1.58
CLCNKA-203ENST00000439316 DSTQ03001 7570 aaKnown RBP5.18□□□□□ -1.58
CLCNKA-203ENST00000439316 KRTAP9-7A8MTY7 169 aa5.12□□□□□ -1.59
CLCNKA-203ENST00000439316 NEBP20929 6669 aa5.02□□□□□ -1.61
CLCNKA-203ENST00000439316 SPRR2DP22532 72 aa5□□□□□ -1.61
CLCNKA-203ENST00000439316 KRTAP12-4P60329 112 aa4.95□□□□□ -1.62
CLCNKA-203ENST00000439316 LCE3BQ5TA77 95 aa4.87□□□□□ -1.63
CLCNKA-203ENST00000439316 MT1AP04731 61 aa4.8□□□□□ -1.64
CLCNKA-203ENST00000439316 KRTAP6-1Q3LI64 71 aa4.8□□□□□ -1.64
CLCNKA-203ENST00000439316 KRTAP4-9Q9BYQ8 210 aa4.76□□□□□ -1.65
CLCNKA-203ENST00000439316 KRTAP5-5Q701N2 237 aaPredicted RBP4.74□□□□□ -1.65
CLCNKA-203ENST00000439316 LCE3DQ9BYE3 92 aa4.63□□□□□ -1.67
CLCNKA-203ENST00000439316 SYNE1Q8NF91 8797 aaKnown RBP4.61□□□□□ -1.67
CLCNKA-203ENST00000439316 LCE3EQ5T5B0 92 aa4.58□□□□□ -1.68
CLCNKA-203ENST00000439316 KRTAP20-1Q3LI63 56 aa4.53□□□□□ -1.68
CLCNKA-203ENST00000439316 KRTAP2-2Q9BYT5 123 aa4.52□□□□□ -1.69
CLCNKA-203ENST00000439316 KRTAP5-4Q6L8H1 288 aa4.51□□□□□ -1.69
CLCNKA-203ENST00000439316 KRTAP9-4Q9BYQ2 154 aa4.47□□□□□ -1.69
CLCNKA-203ENST00000439316 LCE4AQ5TA78 99 aa4.4□□□□□ -1.7
CLCNKA-203ENST00000439316 PRM1P04553 51 aa4.4□□□□□ -1.71
CLCNKA-203ENST00000439316 MT4P47944 62 aa4.38□□□□□ -1.71
CLCNKA-203ENST00000439316 KRTAP4-6Q9BYQ5 205 aa4.35□□□□□ -1.71
CLCNKA-203ENST00000439316 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
CLCNKA-203ENST00000439316 KRTAP6-2Q3LI66 62 aa4.28□□□□□ -1.72
CLCNKA-203ENST00000439316 LCE1DQ5T752 114 aa4.28□□□□□ -1.72
CLCNKA-203ENST00000439316 MT3P25713 68 aa4.26□□□□□ -1.73
CLCNKA-203ENST00000439316 KRTAP20-2Q3LI61 65 aa4.23□□□□□ -1.73
CLCNKA-203ENST00000439316 GPR98Q8WXG9 6306 aa4.15□□□□□ -1.75
CLCNKA-203ENST00000439316 OBSCNQ5VST9 7968 aa4.1□□□□□ -1.75
CLCNKA-203ENST00000439316 KRTAP5-2Q701N4 177 aa4.09□□□□□ -1.75
CLCNKA-203ENST00000439316 KRTAP5-3Q6L8H2 238 aa4.07□□□□□ -1.76
CLCNKA-203ENST00000439316 AHNAK2Q8IVF2 5795 aa3.77□□□□□ -1.81
CLCNKA-203ENST00000439316 KRTAP4-11Q9BYQ6 195 aa3.67□□□□□ -1.82
CLCNKA-203ENST00000439316 LCE1EQ5T753 118 aa3.63□□□□□ -1.83
CLCNKA-203ENST00000439316 MUC5ACP98088 5654 aa3.58□□□□□ -1.84
CLCNKA-203ENST00000439316 KRTAP5-1Q6L8H4 278 aa3.56□□□□□ -1.84
CLCNKA-203ENST00000439316 KRTAP5-8O75690 187 aa3.53□□□□□ -1.84
CLCNKA-203ENST00000439316 KRTAP5-10Q6L8G5 202 aa3.52□□□□□ -1.85
CLCNKA-203ENST00000439316 LCE1BQ5T7P3 118 aa3.47□□□□□ -1.85
CLCNKA-203ENST00000439316 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
CLCNKA-203ENST00000439316 LCE1CQ5T751 118 aa3.4□□□□□ -1.87
CLCNKA-203ENST00000439316 KRTAP5-7Q6L8G8 165 aa3.38□□□□□ -1.87
CLCNKA-203ENST00000439316 MUC5BQ9HC84 5762 aaPredicted RBP3.32□□□□□ -1.88
CLCNKA-203ENST00000439316 AHNAKQ09666 5890 aaKnown RBP3.26□□□□□ -1.89
CLCNKA-203ENST00000439316 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.17□□□□□ -1.9
CLCNKA-203ENST00000439316 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
CLCNKA-203ENST00000439316 KRTAP21-2Q3LI59 83 aa3.11□□□□□ -1.91
CLCNKA-203ENST00000439316 KRTAP5-11Q6L8G4 156 aa2.99□□□□□ -1.93
CLCNKA-203ENST00000439316 KRTAP4-12Q9BQ66 201 aa2.88□□□□□ -1.95
CLCNKA-203ENST00000439316 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
CLCNKA-203ENST00000439316 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
CLCNKA-203ENST00000439316 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
CLCNKA-203ENST00000439316 PHGR1C9JFL3 82 aa2.58□□□□□ -2
CLCNKA-203ENST00000439316 MUC19Q7Z5P9 8384 aa2.53□□□□□ -2.01
CLCNKA-203ENST00000439316 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 80.4 ms