RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 MT1LQ93083 61 aa9.09□□□□□ -0.95
CPNE1-216ENST00000437340 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.08□□□□□ -0.96
CPNE1-216ENST00000437340 SPRR2FQ96RM1 72 aa8.94□□□□□ -0.98
CPNE1-216ENST00000437340 KRTAP5-9P26371 169 aa8.89□□□□□ -0.99
CPNE1-216ENST00000437340 MUC12Q9UKN1 5478 aa8.87□□□□□ -0.99
CPNE1-216ENST00000437340 KRTAP4-7Q9BYR0 210 aa8.84□□□□□ -1
CPNE1-216ENST00000437340 KRTAP6-3Q3LI67 103 aa8.79□□□□□ -1
CPNE1-216ENST00000437340 KRTAP9-6A8MVA2 160 aa8.76□□□□□ -1.01
CPNE1-216ENST00000437340 KRTAP19-3Q7Z4W3 81 aa8.74□□□□□ -1.01
CPNE1-216ENST00000437340 A0A0A0MQY5 61 aa8.72□□□□□ -1.01
CPNE1-216ENST00000437340 MT1GP13640 62 aa8.71□□□□□ -1.02
CPNE1-216ENST00000437340 MDN1Q9NU22 5596 aa8.62□□□□□ -1.03
CPNE1-216ENST00000437340 KRTAP9-7A8MTY7 169 aa8.62□□□□□ -1.03
CPNE1-216ENST00000437340 MT1MQ8N339 61 aa8.62□□□□□ -1.03
CPNE1-216ENST00000437340 LCE1AQ5T7P2 110 aa8.58□□□□□ -1.04
CPNE1-216ENST00000437340 LCE5AQ5TCM9 118 aa8.54□□□□□ -1.04
CPNE1-216ENST00000437340 SPRR2EP22531 72 aa8.53□□□□□ -1.04
CPNE1-216ENST00000437340 SPRR2BP35325 72 aa8.53□□□□□ -1.04
CPNE1-216ENST00000437340 SPRR2AP35326 72 aa8.53□□□□□ -1.04
CPNE1-216ENST00000437340 KRTAP4-3Q9BYR4 195 aa8.46□□□□□ -1.05
CPNE1-216ENST00000437340 KRTAP2-3P0C7H8 128 aa8.33□□□□□ -1.08
CPNE1-216ENST00000437340 KRTAP2-4Q9BYR9 128 aa8.33□□□□□ -1.08
CPNE1-216ENST00000437340 KRTAP2-1Q9BYU5 128 aa8.33□□□□□ -1.08
CPNE1-216ENST00000437340 NEBP20929 6669 aa8.32□□□□□ -1.08
CPNE1-216ENST00000437340 LOC100996750A0A140TA64 210 aa8.28□□□□□ -1.08
CPNE1-216ENST00000437340 SPRR2DP22532 72 aa8.22□□□□□ -1.09
CPNE1-216ENST00000437340 DSTQ03001 7570 aaKnown RBP8.13□□□□□ -1.11
CPNE1-216ENST00000437340 INE1O15225 51 aa8.09□□□□□ -1.11
CPNE1-216ENST00000437340 LCE3BQ5TA77 95 aa7.9□□□□□ -1.14
CPNE1-216ENST00000437340 KRTAP5-5Q701N2 237 aaPredicted RBP7.74□□□□□ -1.17
CPNE1-216ENST00000437340 MT1AP04731 61 aa7.71□□□□□ -1.18
CPNE1-216ENST00000437340 KRTAP6-1Q3LI64 71 aa7.64□□□□□ -1.19
CPNE1-216ENST00000437340 KRTAP20-1Q3LI63 56 aa7.63□□□□□ -1.19
CPNE1-216ENST00000437340 KRTAP2-2Q9BYT5 123 aa7.54□□□□□ -1.2
CPNE1-216ENST00000437340 KRTAP5-4Q6L8H1 288 aa7.39□□□□□ -1.23
CPNE1-216ENST00000437340 SYNE1Q8NF91 8797 aaKnown RBP7.31□□□□□ -1.24
CPNE1-216ENST00000437340 KRTAP9-4Q9BYQ2 154 aa7.28□□□□□ -1.24
CPNE1-216ENST00000437340 LCE4AQ5TA78 99 aa7.25□□□□□ -1.25
CPNE1-216ENST00000437340 KRTAP4-9Q9BYQ8 210 aa7.17□□□□□ -1.26
CPNE1-216ENST00000437340 MT4P47944 62 aa7.15□□□□□ -1.26
CPNE1-216ENST00000437340 KRTAP12-4P60329 112 aa7.13□□□□□ -1.27
CPNE1-216ENST00000437340 KRTAP4-6Q9BYQ5 205 aa7.09□□□□□ -1.27
CPNE1-216ENST00000437340 LCE1DQ5T752 114 aa7.05□□□□□ -1.28
CPNE1-216ENST00000437340 LCE3DQ9BYE3 92 aa7.02□□□□□ -1.29
CPNE1-216ENST00000437340 HMCN1Q96RW7 5635 aa6.97□□□□□ -1.29
CPNE1-216ENST00000437340 MT3P25713 68 aa6.97□□□□□ -1.29
CPNE1-216ENST00000437340 KRTAP6-2Q3LI66 62 aa6.95□□□□□ -1.3
CPNE1-216ENST00000437340 KRTAP20-2Q3LI61 65 aa6.92□□□□□ -1.3
CPNE1-216ENST00000437340 LCE3EQ5T5B0 92 aa6.88□□□□□ -1.31
CPNE1-216ENST00000437340 KRTAP5-3Q6L8H2 238 aa6.68□□□□□ -1.34
CPNE1-216ENST00000437340 KRTAP5-2Q701N4 177 aa6.68□□□□□ -1.34
CPNE1-216ENST00000437340 OBSCNQ5VST9 7968 aa6.36□□□□□ -1.39
CPNE1-216ENST00000437340 AHNAK2Q8IVF2 5795 aa6.28□□□□□ -1.4
CPNE1-216ENST00000437340 PRM1P04553 51 aa6.2□□□□□ -1.42
CPNE1-216ENST00000437340 KRTAP4-11Q9BYQ6 195 aa6.03□□□□□ -1.44
CPNE1-216ENST00000437340 LCE1EQ5T753 118 aa5.95□□□□□ -1.46
CPNE1-216ENST00000437340 KRTAP5-10Q6L8G5 202 aa5.95□□□□□ -1.46
CPNE1-216ENST00000437340 KRTAP5-8O75690 187 aa5.83□□□□□ -1.48
CPNE1-216ENST00000437340 KRTAP5-1Q6L8H4 278 aa5.8□□□□□ -1.48
CPNE1-216ENST00000437340 GPR98Q8WXG9 6306 aa5.78□□□□□ -1.48
CPNE1-216ENST00000437340 MUC5ACP98088 5654 aa5.64□□□□□ -1.51
CPNE1-216ENST00000437340 KRTAP5-7Q6L8G8 165 aa5.59□□□□□ -1.51
CPNE1-216ENST00000437340 LCE1BQ5T7P3 118 aa5.57□□□□□ -1.52
CPNE1-216ENST00000437340 LCE1CQ5T751 118 aa5.55□□□□□ -1.52
CPNE1-216ENST00000437340 KRTAP4-2Q9BYR5 136 aa5.55□□□□□ -1.52
CPNE1-216ENST00000437340 KRTAP9-9Q9BYP9 154 aa5.25□□□□□ -1.57
CPNE1-216ENST00000437340 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.24□□□□□ -1.57
CPNE1-216ENST00000437340 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
CPNE1-216ENST00000437340 KRTAP21-2Q3LI59 83 aa5□□□□□ -1.61
CPNE1-216ENST00000437340 KRTAP5-11Q6L8G4 156 aa4.87□□□□□ -1.63
CPNE1-216ENST00000437340 AHNAKQ09666 5890 aaKnown RBP4.76□□□□□ -1.65
CPNE1-216ENST00000437340 KRTAP4-12Q9BQ66 201 aa4.68□□□□□ -1.66
CPNE1-216ENST00000437340 LCE1FQ5T754 118 aa4.4□□□□□ -1.7
CPNE1-216ENST00000437340 KRTAP4-4Q9BYR3 166 aa4.38□□□□□ -1.71
CPNE1-216ENST00000437340 PHGR1C9JFL3 82 aa4.19□□□□□ -1.74
CPNE1-216ENST00000437340 KRTAP21-1Q3LI58 79 aa3.89□□□□□ -1.79
CPNE1-216ENST00000437340 MUC19Q7Z5P9 8384 aa3.77□□□□□ -1.81
CPNE1-216ENST00000437340 MUC16Q8WXI7 14507 aa2.73□□□□□ -1.97
Retrieved 78 of 20,778 RNA–protein pairs in 13.3 ms