RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 LCE3CQ5T5A8 94 aa7.46□□□□□ -1.21
PTPRF-207ENST00000436724 SPRR2FQ96RM1 72 aa7.41□□□□□ -1.22
PTPRF-207ENST00000436724 KRTAP4-7Q9BYR0 210 aa7.4□□□□□ -1.22
PTPRF-207ENST00000436724 KRTAP9-6A0A140TA67 174 aa7.29□□□□□ -1.24
PTPRF-207ENST00000436724 KRTAP19-3Q7Z4W3 81 aa7.27□□□□□ -1.24
PTPRF-207ENST00000436724 KRTAP19-4Q3LI73 84 aa7.22□□□□□ -1.25
PTPRF-207ENST00000436724 KRTAP5-9P26371 169 aa7.2□□□□□ -1.26
PTPRF-207ENST00000436724 MT1GP13640 62 aa7.19□□□□□ -1.26
PTPRF-207ENST00000436724 MDN1Q9NU22 5596 aa7.17□□□□□ -1.26
PTPRF-207ENST00000436724 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.17□□□□□ -1.26
PTPRF-207ENST00000436724 KRTAP9-6A8MVA2 160 aa7.16□□□□□ -1.26
PTPRF-207ENST00000436724 MT1MQ8N339 61 aa7.16□□□□□ -1.26
PTPRF-207ENST00000436724 KRTAP4-3Q9BYR4 195 aa7.16□□□□□ -1.26
PTPRF-207ENST00000436724 LCE5AQ5TCM9 118 aa7.13□□□□□ -1.27
PTPRF-207ENST00000436724 LCE1AQ5T7P2 110 aa7.04□□□□□ -1.28
PTPRF-207ENST00000436724 DSTQ03001 7570 aaKnown RBP7.03□□□□□ -1.28
PTPRF-207ENST00000436724 INE1O15225 51 aa7.02□□□□□ -1.29
PTPRF-207ENST00000436724 KRTAP6-3Q3LI67 103 aa6.98□□□□□ -1.29
PTPRF-207ENST00000436724 SPRR2EP22531 72 aa6.96□□□□□ -1.29
PTPRF-207ENST00000436724 SPRR2BP35325 72 aa6.96□□□□□ -1.29
PTPRF-207ENST00000436724 SPRR2AP35326 72 aa6.96□□□□□ -1.29
PTPRF-207ENST00000436724 LOC100996750A0A140TA64 210 aa6.95□□□□□ -1.3
PTPRF-207ENST00000436724 KRTAP2-3P0C7H8 128 aa6.82□□□□□ -1.32
PTPRF-207ENST00000436724 KRTAP2-4Q9BYR9 128 aa6.82□□□□□ -1.32
PTPRF-207ENST00000436724 KRTAP2-1Q9BYU5 128 aa6.82□□□□□ -1.32
PTPRF-207ENST00000436724 KRTAP9-7A8MTY7 169 aa6.72□□□□□ -1.33
PTPRF-207ENST00000436724 SPRR2DP22532 72 aa6.69□□□□□ -1.34
PTPRF-207ENST00000436724 NEBP20929 6669 aa6.56□□□□□ -1.36
PTPRF-207ENST00000436724 KRTAP5-5Q701N2 237 aaPredicted RBP6.43□□□□□ -1.38
PTPRF-207ENST00000436724 LCE3BQ5TA77 95 aa6.41□□□□□ -1.38
PTPRF-207ENST00000436724 KRTAP6-1Q3LI64 71 aa6.35□□□□□ -1.39
PTPRF-207ENST00000436724 MT1AP04731 61 aa6.31□□□□□ -1.4
PTPRF-207ENST00000436724 SYNE1Q8NF91 8797 aaKnown RBP6.25□□□□□ -1.41
PTPRF-207ENST00000436724 KRTAP5-4Q6L8H1 288 aa6.04□□□□□ -1.44
PTPRF-207ENST00000436724 KRTAP9-4Q9BYQ2 154 aa6□□□□□ -1.45
PTPRF-207ENST00000436724 KRTAP12-4P60329 112 aa5.97□□□□□ -1.45
PTPRF-207ENST00000436724 KRTAP4-9Q9BYQ8 210 aa5.97□□□□□ -1.45
PTPRF-207ENST00000436724 KRTAP2-2Q9BYT5 123 aa5.96□□□□□ -1.46
PTPRF-207ENST00000436724 KRTAP20-1Q3LI63 56 aa5.93□□□□□ -1.46
PTPRF-207ENST00000436724 MT4P47944 62 aa5.88□□□□□ -1.47
PTPRF-207ENST00000436724 KRTAP4-6Q9BYQ5 205 aa5.86□□□□□ -1.47
PTPRF-207ENST00000436724 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
PTPRF-207ENST00000436724 KRTAP6-2Q3LI66 62 aa5.82□□□□□ -1.48
PTPRF-207ENST00000436724 LCE1DQ5T752 114 aa5.72□□□□□ -1.49
PTPRF-207ENST00000436724 HMCN1Q96RW7 5635 aa5.71□□□□□ -1.49
PTPRF-207ENST00000436724 MT3P25713 68 aa5.7□□□□□ -1.5
PTPRF-207ENST00000436724 KRTAP20-2Q3LI61 65 aa5.68□□□□□ -1.5
PTPRF-207ENST00000436724 OBSCNQ5VST9 7968 aa5.66□□□□□ -1.5
PTPRF-207ENST00000436724 LCE3DQ9BYE3 92 aa5.64□□□□□ -1.51
PTPRF-207ENST00000436724 LCE3EQ5T5B0 92 aa5.56□□□□□ -1.52
PTPRF-207ENST00000436724 KRTAP5-2Q701N4 177 aa5.5□□□□□ -1.53
PTPRF-207ENST00000436724 KRTAP5-3Q6L8H2 238 aa5.46□□□□□ -1.54
PTPRF-207ENST00000436724 PRM1P04553 51 aa5.26□□□□□ -1.57
PTPRF-207ENST00000436724 AHNAK2Q8IVF2 5795 aa4.91□□□□□ -1.62
PTPRF-207ENST00000436724 KRTAP4-11Q9BYQ6 195 aa4.89□□□□□ -1.63
PTPRF-207ENST00000436724 LCE1EQ5T753 118 aa4.88□□□□□ -1.63
PTPRF-207ENST00000436724 KRTAP5-1Q6L8H4 278 aa4.78□□□□□ -1.64
PTPRF-207ENST00000436724 LCE1BQ5T7P3 118 aa4.72□□□□□ -1.65
PTPRF-207ENST00000436724 MUC5ACP98088 5654 aa4.72□□□□□ -1.65
PTPRF-207ENST00000436724 KRTAP5-8O75690 187 aa4.71□□□□□ -1.66
PTPRF-207ENST00000436724 KRTAP5-10Q6L8G5 202 aa4.64□□□□□ -1.67
PTPRF-207ENST00000436724 KRTAP4-2Q9BYR5 136 aa4.63□□□□□ -1.67
PTPRF-207ENST00000436724 LCE1CQ5T751 118 aa4.58□□□□□ -1.68
PTPRF-207ENST00000436724 KRTAP5-7Q6L8G8 165 aa4.51□□□□□ -1.69
PTPRF-207ENST00000436724 GPR98Q8WXG9 6306 aa4.34□□□□□ -1.71
PTPRF-207ENST00000436724 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.27□□□□□ -1.73
PTPRF-207ENST00000436724 KRTAP9-9Q9BYP9 154 aa4.17□□□□□ -1.74
PTPRF-207ENST00000436724 MUC5BQ9HC84 5762 aaPredicted RBP4.16□□□□□ -1.74
PTPRF-207ENST00000436724 KRTAP21-2Q3LI59 83 aa4.13□□□□□ -1.75
PTPRF-207ENST00000436724 KRTAP5-11Q6L8G4 156 aa4.02□□□□□ -1.77
PTPRF-207ENST00000436724 KRTAP4-12Q9BQ66 201 aa3.9□□□□□ -1.78
PTPRF-207ENST00000436724 KRTAP4-4Q9BYR3 166 aa3.77□□□□□ -1.81
PTPRF-207ENST00000436724 AHNAKQ09666 5890 aaKnown RBP3.57□□□□□ -1.84
PTPRF-207ENST00000436724 LCE1FQ5T754 118 aa3.52□□□□□ -1.85
PTPRF-207ENST00000436724 PHGR1C9JFL3 82 aa3.48□□□□□ -1.85
PTPRF-207ENST00000436724 MUC19Q7Z5P9 8384 aa3.35□□□□□ -1.87
PTPRF-207ENST00000436724 KRTAP21-1Q3LI58 79 aa3.32□□□□□ -1.88
PTPRF-207ENST00000436724 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 12.8 ms