RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SPRR2BP35325 72 aa4.48□□□□□ -1.69
COL28A1-203ENST00000435823 SPRR2AP35326 72 aa4.48□□□□□ -1.69
COL28A1-203ENST00000435823 A8MU10 97 aa4.46□□□□□ -1.7
COL28A1-203ENST00000435823 KRTAP23-1A1A580 65 aa4.44□□□□□ -1.7
COL28A1-203ENST00000435823 KRTAP4-4Q9BYR3 166 aa4.42□□□□□ -1.7
COL28A1-203ENST00000435823 UQCR11O14957 56 aa4.39□□□□□ -1.71
COL28A1-203ENST00000435823 RPS28P62857 69 aaKnown RBP4.36□□□□□ -1.71
COL28A1-203ENST00000435823 KRTAP2-3P0C7H8 128 aa4.35□□□□□ -1.71
COL28A1-203ENST00000435823 KRTAP2-4Q9BYR9 128 aa4.35□□□□□ -1.71
COL28A1-203ENST00000435823 V9GYY9 64 aa4.35□□□□□ -1.71
COL28A1-203ENST00000435823 KRTAP2-2Q9BYT5 123 aa4.34□□□□□ -1.71
COL28A1-203ENST00000435823 SPRR2DP22532 72 aa4.33□□□□□ -1.72
COL28A1-203ENST00000435823 MIR22HGQ0VDD5 57 aa4.3□□□□□ -1.72
COL28A1-203ENST00000435823 TNP1P09430 55 aa4.29□□□□□ -1.72
COL28A1-203ENST00000435823 Q1T7F1 81 aa4.29□□□□□ -1.72
COL28A1-203ENST00000435823 C10orf95Q9H7T3 257 aa4.29□□□□□ -1.72
COL28A1-203ENST00000435823 PSPHP1O15172 72 aa4.28□□□□□ -1.72
COL28A1-203ENST00000435823 KRTAP19-7Q3SYF9 63 aa4.28□□□□□ -1.72
COL28A1-203ENST00000435823 MT1EP04732 61 aa4.25□□□□□ -1.73
COL28A1-203ENST00000435823 K7ERS5 55 aa4.24□□□□□ -1.73
COL28A1-203ENST00000435823 KRTAP19-5Q3LI72 72 aa4.22□□□□□ -1.73
COL28A1-203ENST00000435823 KRTAP2-1Q9BYU5 128 aa4.22□□□□□ -1.73
COL28A1-203ENST00000435823 KRTAP19-3Q7Z4W3 81 aa4.2□□□□□ -1.74
COL28A1-203ENST00000435823 LCE3AQ5TA76 89 aa4.19□□□□□ -1.74
COL28A1-203ENST00000435823 A6NED7 52 aa4.16□□□□□ -1.74
COL28A1-203ENST00000435823 PRO0628Q9UI54 55 aa4.13□□□□□ -1.75
COL28A1-203ENST00000435823 MT1GP13640 62 aa4.12□□□□□ -1.75
COL28A1-203ENST00000435823 PP632Q6XCG6 107 aa4.12□□□□□ -1.75
COL28A1-203ENST00000435823 KRTAP25-1Q3LHN0 102 aa4.11□□□□□ -1.75
COL28A1-203ENST00000435823 MT1LQ93083 61 aa4.08□□□□□ -1.76
COL28A1-203ENST00000435823 BRK1Q8WUW1 75 aa4.06□□□□□ -1.76
COL28A1-203ENST00000435823 KRTAP12-3P60328 96 aa4.04□□□□□ -1.76
COL28A1-203ENST00000435823 MT1MQ8N339 61 aa4.04□□□□□ -1.76
COL28A1-203ENST00000435823 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.76
COL28A1-203ENST00000435823 GPR98Q8WXG9 6306 aa4.03□□□□□ -1.76
COL28A1-203ENST00000435823 CDC42SE1Q9NRR8 79 aa4.01□□□□□ -1.77
COL28A1-203ENST00000435823 OBSCNQ5VST9 7968 aa3.94□□□□□ -1.78
COL28A1-203ENST00000435823 ROMO1P60602 79 aa3.93□□□□□ -1.78
COL28A1-203ENST00000435823 KRTAP4-3Q9BYR4 195 aa3.91□□□□□ -1.78
COL28A1-203ENST00000435823 PMAIP1Q13794 54 aa3.88□□□□□ -1.79
COL28A1-203ENST00000435823 KRTAP9-6A8MVA2 160 aa3.84□□□□□ -1.79
COL28A1-203ENST00000435823 KTN1-AS1Q86SY8 53 aa3.81□□□□□ -1.8
COL28A1-203ENST00000435823 KRTAP5-2Q701N4 177 aa3.8□□□□□ -1.8
COL28A1-203ENST00000435823 MT4P47944 62 aa3.77□□□□□ -1.81
COL28A1-203ENST00000435823 LCE3CQ5T5A8 94 aa3.73□□□□□ -1.81
COL28A1-203ENST00000435823 HMCN1Q96RW7 5635 aa3.72□□□□□ -1.81
COL28A1-203ENST00000435823 KRTAP5-5Q701N2 237 aaPredicted RBP3.67□□□□□ -1.82
COL28A1-203ENST00000435823 MT3P25713 68 aa3.63□□□□□ -1.83
COL28A1-203ENST00000435823 KRTAP12-4P60329 112 aa3.59□□□□□ -1.83
COL28A1-203ENST00000435823 A0A0A0MQY5 61 aa3.58□□□□□ -1.84
COL28A1-203ENST00000435823 SPRR5A0A1B0GTR4 108 aa3.56□□□□□ -1.84
COL28A1-203ENST00000435823 KRTAP5-10Q6L8G5 202 aa3.56□□□□□ -1.84
COL28A1-203ENST00000435823 AHNAK2Q8IVF2 5795 aa3.56□□□□□ -1.84
COL28A1-203ENST00000435823 KRTAP20-2Q3LI61 65 aa3.55□□□□□ -1.84
COL28A1-203ENST00000435823 KRTAP5-7Q6L8G8 165 aa3.53□□□□□ -1.84
COL28A1-203ENST00000435823 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.84
COL28A1-203ENST00000435823 PRAC1Q96KF2 57 aa3.5□□□□□ -1.85
COL28A1-203ENST00000435823 MT1AP04731 61 aa3.49□□□□□ -1.85
COL28A1-203ENST00000435823 KRTAP6-1Q3LI64 71 aa3.44□□□□□ -1.86
COL28A1-203ENST00000435823 KRTAP5-8O75690 187 aa3.27□□□□□ -1.89
COL28A1-203ENST00000435823 KRTAP6-2Q3LI66 62 aa3.27□□□□□ -1.89
COL28A1-203ENST00000435823 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
COL28A1-203ENST00000435823 AHNAKQ09666 5890 aaKnown RBP3.01□□□□□ -1.93
COL28A1-203ENST00000435823 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
COL28A1-203ENST00000435823 MUC5ACP98088 5654 aa2.95□□□□□ -1.94
COL28A1-203ENST00000435823 LUZP6Q538Z0 58 aa2.93□□□□□ -1.94
COL28A1-203ENST00000435823 LCE1CQ5T751 118 aa2.92□□□□□ -1.94
COL28A1-203ENST00000435823 LCE1BQ5T7P3 118 aa2.92□□□□□ -1.94
COL28A1-203ENST00000435823 MUC5BQ9HC84 5762 aaPredicted RBP2.9□□□□□ -1.95
COL28A1-203ENST00000435823 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
COL28A1-203ENST00000435823 LCE3DQ9BYE3 92 aa2.73□□□□□ -1.97
COL28A1-203ENST00000435823 INE1O15225 51 aa2.55□□□□□ -2
COL28A1-203ENST00000435823 MUC19Q7Z5P9 8384 aa2.54□□□□□ -2
COL28A1-203ENST00000435823 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
COL28A1-203ENST00000435823 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
COL28A1-203ENST00000435823 PRM1P04553 51 aa2.01□□□□□ -2.09
COL28A1-203ENST00000435823 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
COL28A1-203ENST00000435823 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 55.6 ms