RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 KRTAP9-6A8MVA2 160 aa4.19□□□□□ -1.74
CD44-209ENST00000433892 KRTAP4-7Q9BYR0 210 aa4.17□□□□□ -1.74
CD44-209ENST00000433892 FSIP2Q5CZC0 6907 aa4.17□□□□□ -1.74
CD44-209ENST00000433892 LCE1DQ5T752 114 aa4.12□□□□□ -1.75
CD44-209ENST00000433892 LCE4AQ5TA78 99 aa4.1□□□□□ -1.75
CD44-209ENST00000433892 MT1EP04732 61 aa4.09□□□□□ -1.75
CD44-209ENST00000433892 MT1LQ93083 61 aa4.09□□□□□ -1.75
CD44-209ENST00000433892 KRTAP19-4Q3LI73 84 aa4.04□□□□□ -1.76
CD44-209ENST00000433892 KRTAP19-6Q3LI70 58 aa4.01□□□□□ -1.77
CD44-209ENST00000433892 KRTAP2-3P0C7H8 128 aa4.01□□□□□ -1.77
CD44-209ENST00000433892 KRTAP2-4Q9BYR9 128 aa4.01□□□□□ -1.77
CD44-209ENST00000433892 KRTAP2-1Q9BYU5 128 aa4.01□□□□□ -1.77
CD44-209ENST00000433892 FCGBPQ9Y6R7 5405 aaPredicted RBP4□□□□□ -1.77
CD44-209ENST00000433892 KRTAP9-7A8MTY7 169 aa4□□□□□ -1.77
CD44-209ENST00000433892 KRTAP4-9Q9BYQ8 210 aa3.98□□□□□ -1.77
CD44-209ENST00000433892 MUC12Q9UKN1 5478 aa3.98□□□□□ -1.77
CD44-209ENST00000433892 KRTAP4-3Q9BYR4 195 aa3.91□□□□□ -1.78
CD44-209ENST00000433892 KRTAP4-2Q9BYR5 136 aa3.9□□□□□ -1.79
CD44-209ENST00000433892 KRTAP4-11Q9BYQ6 195 aa3.86□□□□□ -1.79
CD44-209ENST00000433892 LCE5AQ5TCM9 118 aa3.85□□□□□ -1.79
CD44-209ENST00000433892 MT1GP13640 62 aa3.84□□□□□ -1.79
CD44-209ENST00000433892 KRTAP19-3Q7Z4W3 81 aa3.82□□□□□ -1.8
CD44-209ENST00000433892 MT1MQ8N339 61 aa3.82□□□□□ -1.8
CD44-209ENST00000433892 DSTQ03001 7570 aaKnown RBP3.8□□□□□ -1.8
CD44-209ENST00000433892 CRCT1Q9UGL9 99 aa3.78□□□□□ -1.8
CD44-209ENST00000433892 MACF1Q9UPN3 7388 aaKnown RBP3.72□□□□□ -1.81
CD44-209ENST00000433892 SPRR2FQ96RM1 72 aa3.71□□□□□ -1.82
CD44-209ENST00000433892 MDN1Q9NU22 5596 aa3.65□□□□□ -1.83
CD44-209ENST00000433892 SYNE2Q8WXH0 6885 aaKnown RBP3.64□□□□□ -1.83
CD44-209ENST00000433892 KRTAP12-4P60329 112 aa3.57□□□□□ -1.84
CD44-209ENST00000433892 SYNE1Q8NF91 8797 aaKnown RBP3.49□□□□□ -1.85
CD44-209ENST00000433892 KRTAP6-1Q3LI64 71 aa3.48□□□□□ -1.85
CD44-209ENST00000433892 LCE1AQ5T7P2 110 aa3.44□□□□□ -1.86
CD44-209ENST00000433892 MT1AP04731 61 aa3.41□□□□□ -1.86
CD44-209ENST00000433892 KRTAP5-3Q6L8H2 238 aa3.41□□□□□ -1.86
CD44-209ENST00000433892 KRTAP5-9P26371 169 aa3.4□□□□□ -1.87
CD44-209ENST00000433892 KRTAP5-5Q701N2 237 aaPredicted RBP3.37□□□□□ -1.87
CD44-209ENST00000433892 SPRR2EP22531 72 aa3.36□□□□□ -1.87
CD44-209ENST00000433892 SPRR2BP35325 72 aa3.36□□□□□ -1.87
CD44-209ENST00000433892 SPRR2AP35326 72 aa3.36□□□□□ -1.87
CD44-209ENST00000433892 LCE3DQ9BYE3 92 aa3.34□□□□□ -1.87
CD44-209ENST00000433892 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
CD44-209ENST00000433892 SPRR2DP22532 72 aa3.21□□□□□ -1.9
CD44-209ENST00000433892 OBSCNQ5VST9 7968 aa3.2□□□□□ -1.9
CD44-209ENST00000433892 PRM1P04553 51 aa3.16□□□□□ -1.9
CD44-209ENST00000433892 KRTAP6-2Q3LI66 62 aa3.13□□□□□ -1.91
CD44-209ENST00000433892 KRTAP6-3Q3LI67 103 aa3.09□□□□□ -1.92
CD44-209ENST00000433892 MT3P25713 68 aa3.08□□□□□ -1.92
CD44-209ENST00000433892 NEBP20929 6669 aa2.97□□□□□ -1.93
CD44-209ENST00000433892 KRTAP5-4Q6L8H1 288 aa2.95□□□□□ -1.94
CD44-209ENST00000433892 KRTAP20-1Q3LI63 56 aa2.93□□□□□ -1.94
CD44-209ENST00000433892 MT4P47944 62 aa2.85□□□□□ -1.95
CD44-209ENST00000433892 HMCN1Q96RW7 5635 aa2.8□□□□□ -1.96
CD44-209ENST00000433892 KRTAP20-2Q3LI61 65 aa2.79□□□□□ -1.96
CD44-209ENST00000433892 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
CD44-209ENST00000433892 KRTAP2-2Q9BYT5 123 aa2.76□□□□□ -1.97
CD44-209ENST00000433892 MUC5ACP98088 5654 aa2.68□□□□□ -1.98
CD44-209ENST00000433892 KRTAP5-11Q6L8G4 156 aa2.61□□□□□ -1.99
CD44-209ENST00000433892 LCE1FQ5T754 118 aa2.57□□□□□ -2
CD44-209ENST00000433892 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
CD44-209ENST00000433892 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
CD44-209ENST00000433892 LCE1BQ5T7P3 118 aa2.52□□□□□ -2.01
CD44-209ENST00000433892 LCE1EQ5T753 118 aa2.51□□□□□ -2.01
CD44-209ENST00000433892 KRTAP5-10Q6L8G5 202 aa2.43□□□□□ -2.02
CD44-209ENST00000433892 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
CD44-209ENST00000433892 LCE1CQ5T751 118 aa2.37□□□□□ -2.03
CD44-209ENST00000433892 AHNAK2Q8IVF2 5795 aa2.32□□□□□ -2.04
CD44-209ENST00000433892 KRTAP21-2Q3LI59 83 aa2.24□□□□□ -2.05
CD44-209ENST00000433892 KRTAP5-7Q6L8G8 165 aa2.21□□□□□ -2.06
CD44-209ENST00000433892 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
CD44-209ENST00000433892 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.06
CD44-209ENST00000433892 MUC5BQ9HC84 5762 aaPredicted RBP2.09□□□□□ -2.07
CD44-209ENST00000433892 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
CD44-209ENST00000433892 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
CD44-209ENST00000433892 AHNAKQ09666 5890 aaKnown RBP1.92□□□□□ -2.1
CD44-209ENST00000433892 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
CD44-209ENST00000433892 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 18.7 ms