RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 A8MU10 97 aa5.05□□□□□ -1.6
SDC1-204ENST00000429035 A0A1B0GU69 56 aa5.04□□□□□ -1.6
SDC1-204ENST00000429035 TNP1P09430 55 aa5.03□□□□□ -1.6
SDC1-204ENST00000429035 AHNAK2Q8IVF2 5795 aa5.03□□□□□ -1.6
SDC1-204ENST00000429035 KRTAP5-4Q6L8H1 288 aa5□□□□□ -1.61
SDC1-204ENST00000429035 KRTAP4-6Q9BYQ5 205 aa5□□□□□ -1.61
SDC1-204ENST00000429035 KRTAP5-10Q6L8G5 202 aa4.96□□□□□ -1.62
SDC1-204ENST00000429035 PRR15LQ9BU68 103 aa4.96□□□□□ -1.62
SDC1-204ENST00000429035 LINC01558Q9Y6Z2 57 aa4.96□□□□□ -1.62
SDC1-204ENST00000429035 PCP4P48539 62 aa4.95□□□□□ -1.62
SDC1-204ENST00000429035 KRTAP4-7Q9BYR0 210 aa4.91□□□□□ -1.62
SDC1-204ENST00000429035 KRTAP12-3P60328 96 aa4.86□□□□□ -1.63
SDC1-204ENST00000429035 RPS28P62857 69 aaKnown RBP4.83□□□□□ -1.64
SDC1-204ENST00000429035 Q1T7F1 81 aa4.83□□□□□ -1.64
SDC1-204ENST00000429035 KRTAP5-3Q6L8H2 238 aa4.82□□□□□ -1.64
SDC1-204ENST00000429035 V9GYY9 64 aa4.82□□□□□ -1.64
SDC1-204ENST00000429035 UQCR11O14957 56 aa4.79□□□□□ -1.64
SDC1-204ENST00000429035 KRTAP20-2Q3LI61 65 aa4.79□□□□□ -1.64
SDC1-204ENST00000429035 KRTAP5-7Q6L8G8 165 aa4.79□□□□□ -1.64
SDC1-204ENST00000429035 KRTAP5-5Q701N2 237 aaPredicted RBP4.72□□□□□ -1.65
SDC1-204ENST00000429035 PSPHP1O15172 72 aa4.71□□□□□ -1.66
SDC1-204ENST00000429035 KRTAP12-4P60329 112 aa4.7□□□□□ -1.66
SDC1-204ENST00000429035 SPRR5A0A1B0GTR4 108 aa4.69□□□□□ -1.66
SDC1-204ENST00000429035 MIR22HGQ0VDD5 57 aa4.69□□□□□ -1.66
SDC1-204ENST00000429035 LOC100996750A0A140TA64 210 aa4.67□□□□□ -1.66
SDC1-204ENST00000429035 SYNE1Q8NF91 8797 aaKnown RBP4.62□□□□□ -1.67
SDC1-204ENST00000429035 K7ERS5 55 aa4.6□□□□□ -1.67
SDC1-204ENST00000429035 KRTAP25-1Q3LHN0 102 aa4.6□□□□□ -1.67
SDC1-204ENST00000429035 A6NED7 52 aa4.58□□□□□ -1.68
SDC1-204ENST00000429035 KRTAP15-1Q3LI76 137 aa4.46□□□□□ -1.7
SDC1-204ENST00000429035 CDC42SE1Q9NRR8 79 aa4.46□□□□□ -1.7
SDC1-204ENST00000429035 KRTAP19-4Q3LI73 84 aa4.44□□□□□ -1.7
SDC1-204ENST00000429035 LCE3CQ5T5A8 94 aa4.43□□□□□ -1.7
SDC1-204ENST00000429035 KRTAP4-11Q9BYQ6 195 aa4.41□□□□□ -1.7
SDC1-204ENST00000429035 MT1AP04731 61 aa4.37□□□□□ -1.71
SDC1-204ENST00000429035 KRTAP6-1Q3LI64 71 aa4.37□□□□□ -1.71
SDC1-204ENST00000429035 KRTAP5-2Q701N4 177 aa4.35□□□□□ -1.71
SDC1-204ENST00000429035 KRTAP23-1A1A580 65 aa4.34□□□□□ -1.71
SDC1-204ENST00000429035 ROMO1P60602 79 aa4.29□□□□□ -1.72
SDC1-204ENST00000429035 KRTAP5-8O75690 187 aa4.26□□□□□ -1.73
SDC1-204ENST00000429035 KRTAP6-2Q3LI66 62 aa4.22□□□□□ -1.73
SDC1-204ENST00000429035 KRTAP9-4Q9BYQ2 154 aa4.22□□□□□ -1.73
SDC1-204ENST00000429035 KRTAP9-6A8MVA2 160 aa4.18□□□□□ -1.74
SDC1-204ENST00000429035 BRK1Q8WUW1 75 aa4.17□□□□□ -1.74
SDC1-204ENST00000429035 OBSCNQ5VST9 7968 aa4.13□□□□□ -1.75
SDC1-204ENST00000429035 MUC5BQ9HC84 5762 aaPredicted RBP4.13□□□□□ -1.75
SDC1-204ENST00000429035 MUC5ACP98088 5654 aa4.13□□□□□ -1.75
SDC1-204ENST00000429035 KRTAP9-9Q9BYP9 154 aa4.12□□□□□ -1.75
SDC1-204ENST00000429035 AHNAKQ09666 5890 aaKnown RBP4.12□□□□□ -1.75
SDC1-204ENST00000429035 MT3P25713 68 aa4.01□□□□□ -1.77
SDC1-204ENST00000429035 PMAIP1Q13794 54 aa3.96□□□□□ -1.78
SDC1-204ENST00000429035 KRTAP5-1Q6L8H4 278 aa3.95□□□□□ -1.78
SDC1-204ENST00000429035 PRO0628Q9UI54 55 aa3.92□□□□□ -1.78
SDC1-204ENST00000429035 PRAC1Q96KF2 57 aa3.71□□□□□ -1.82
SDC1-204ENST00000429035 KTN1-AS1Q86SY8 53 aa3.7□□□□□ -1.82
SDC1-204ENST00000429035 LCE1EQ5T753 118 aa3.67□□□□□ -1.82
SDC1-204ENST00000429035 SVIPQ8NHG7 77 aa3.67□□□□□ -1.82
SDC1-204ENST00000429035 LCE1BQ5T7P3 118 aa3.6□□□□□ -1.83
SDC1-204ENST00000429035 KRTAP4-2Q9BYR5 136 aa3.53□□□□□ -1.84
SDC1-204ENST00000429035 LCE1CQ5T751 118 aa3.42□□□□□ -1.86
SDC1-204ENST00000429035 KRTAP4-12Q9BQ66 201 aa3.34□□□□□ -1.87
SDC1-204ENST00000429035 LUZP6Q538Z0 58 aa3.18□□□□□ -1.9
SDC1-204ENST00000429035 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
SDC1-204ENST00000429035 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
SDC1-204ENST00000429035 LCE1FQ5T754 118 aa3.07□□□□□ -1.92
SDC1-204ENST00000429035 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.07□□□□□ -1.92
SDC1-204ENST00000429035 PHGR1C9JFL3 82 aa2.96□□□□□ -1.94
SDC1-204ENST00000429035 LCE3EQ5T5B0 92 aa2.93□□□□□ -1.94
SDC1-204ENST00000429035 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
SDC1-204ENST00000429035 NDUFAF8A1L188 74 aa2.76□□□□□ -1.97
SDC1-204ENST00000429035 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
SDC1-204ENST00000429035 H3BS24 57 aa2.59□□□□□ -1.99
SDC1-204ENST00000429035 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
SDC1-204ENST00000429035 A0A0A0MQY5 61 aa2.52□□□□□ -2.01
SDC1-204ENST00000429035 INE1O15225 51 aa2.28□□□□□ -2.04
SDC1-204ENST00000429035 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
SDC1-204ENST00000429035 PRM1P04553 51 aa2.18□□□□□ -2.06
SDC1-204ENST00000429035 MUC16Q8WXI7 14507 aa1.82□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 128 ms