RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 KTN1-AS1Q86SY8 53 aa4.86□□□□□ -1.63
PRPF39-202ENST00000424478 NEBP20929 6669 aa4.84□□□□□ -1.63
PRPF39-202ENST00000424478 LCE1AQ5T7P2 110 aa4.84□□□□□ -1.63
PRPF39-202ENST00000424478 KRTAP23-1A1A580 65 aa4.83□□□□□ -1.64
PRPF39-202ENST00000424478 PP632Q6XCG6 107 aa4.83□□□□□ -1.64
PRPF39-202ENST00000424478 MT1LQ93083 61 aa4.79□□□□□ -1.64
PRPF39-202ENST00000424478 KRTAP4-7Q9BYR0 210 aa4.77□□□□□ -1.65
PRPF39-202ENST00000424478 KRTAP19-3Q7Z4W3 81 aa4.76□□□□□ -1.65
PRPF39-202ENST00000424478 KRTAP15-1Q3LI76 137 aa4.73□□□□□ -1.65
PRPF39-202ENST00000424478 SVIPQ8NHG7 77 aa4.72□□□□□ -1.65
PRPF39-202ENST00000424478 KRTAP4-3Q9BYR4 195 aa4.71□□□□□ -1.65
PRPF39-202ENST00000424478 LCE5AQ5TCM9 118 aa4.71□□□□□ -1.66
PRPF39-202ENST00000424478 SPRR2DP22532 72 aa4.67□□□□□ -1.66
PRPF39-202ENST00000424478 MT1MQ8N339 61 aa4.66□□□□□ -1.66
PRPF39-202ENST00000424478 MT1GP13640 62 aa4.66□□□□□ -1.66
PRPF39-202ENST00000424478 LCE3CQ5T5A8 94 aa4.57□□□□□ -1.68
PRPF39-202ENST00000424478 LCE3BQ5TA77 95 aa4.5□□□□□ -1.69
PRPF39-202ENST00000424478 LOC100996750A0A140TA64 210 aa4.49□□□□□ -1.69
PRPF39-202ENST00000424478 KRTAP20-1Q3LI63 56 aa4.45□□□□□ -1.7
PRPF39-202ENST00000424478 KRTAP9-6A8MVA2 160 aa4.42□□□□□ -1.7
PRPF39-202ENST00000424478 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
PRPF39-202ENST00000424478 KRTAP2-4Q9BYR9 128 aa4.41□□□□□ -1.7
PRPF39-202ENST00000424478 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
PRPF39-202ENST00000424478 KRTAP2-2Q9BYT5 123 aa4.31□□□□□ -1.72
PRPF39-202ENST00000424478 KRTAP2-1Q9BYU5 128 aa4.31□□□□□ -1.72
PRPF39-202ENST00000424478 SPRR5A0A1B0GTR4 108 aa4.23□□□□□ -1.73
PRPF39-202ENST00000424478 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
PRPF39-202ENST00000424478 SYNE1Q8NF91 8797 aaKnown RBP4.21□□□□□ -1.74
PRPF39-202ENST00000424478 KRTAP5-5Q701N2 237 aaPredicted RBP4.19□□□□□ -1.74
PRPF39-202ENST00000424478 MT4P47944 62 aa4.15□□□□□ -1.74
PRPF39-202ENST00000424478 KRTAP6-1Q3LI64 71 aa4.09□□□□□ -1.75
PRPF39-202ENST00000424478 KRTAP5-4Q6L8H1 288 aa4.08□□□□□ -1.76
PRPF39-202ENST00000424478 KRTAP4-6Q9BYQ5 205 aa4.08□□□□□ -1.76
PRPF39-202ENST00000424478 HMCN1Q96RW7 5635 aa4.08□□□□□ -1.76
PRPF39-202ENST00000424478 LCE1DQ5T752 114 aa4.06□□□□□ -1.76
PRPF39-202ENST00000424478 MT1AP04731 61 aa4.02□□□□□ -1.77
PRPF39-202ENST00000424478 LCE4AQ5TA78 99 aa4.02□□□□□ -1.77
PRPF39-202ENST00000424478 LUZP6Q538Z0 58 aa3.97□□□□□ -1.77
PRPF39-202ENST00000424478 KRTAP12-4P60329 112 aa3.93□□□□□ -1.78
PRPF39-202ENST00000424478 OBSCNQ5VST9 7968 aa3.93□□□□□ -1.78
PRPF39-202ENST00000424478 KRTAP20-2Q3LI61 65 aa3.89□□□□□ -1.79
PRPF39-202ENST00000424478 KRTAP9-4Q9BYQ2 154 aa3.86□□□□□ -1.79
PRPF39-202ENST00000424478 NDUFAF8A1L188 74 aa3.83□□□□□ -1.8
PRPF39-202ENST00000424478 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
PRPF39-202ENST00000424478 KRTAP5-3Q6L8H2 238 aa3.73□□□□□ -1.81
PRPF39-202ENST00000424478 H3BS24 57 aa3.7□□□□□ -1.82
PRPF39-202ENST00000424478 AHNAK2Q8IVF2 5795 aa3.67□□□□□ -1.82
PRPF39-202ENST00000424478 KRTAP5-2Q701N4 177 aa3.66□□□□□ -1.82
PRPF39-202ENST00000424478 MT3P25713 68 aa3.65□□□□□ -1.83
PRPF39-202ENST00000424478 GPR98Q8WXG9 6306 aa3.55□□□□□ -1.84
PRPF39-202ENST00000424478 KRTAP5-10Q6L8G5 202 aa3.47□□□□□ -1.85
PRPF39-202ENST00000424478 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
PRPF39-202ENST00000424478 LCE3DQ9BYE3 92 aa3.39□□□□□ -1.87
PRPF39-202ENST00000424478 KRTAP5-8O75690 187 aa3.31□□□□□ -1.88
PRPF39-202ENST00000424478 KRTAP5-1Q6L8H4 278 aa3.25□□□□□ -1.89
PRPF39-202ENST00000424478 LCE3EQ5T5B0 92 aa3.24□□□□□ -1.89
PRPF39-202ENST00000424478 MUC5ACP98088 5654 aa3.2□□□□□ -1.9
PRPF39-202ENST00000424478 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
PRPF39-202ENST00000424478 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
PRPF39-202ENST00000424478 LCE1BQ5T7P3 118 aa3.16□□□□□ -1.9
PRPF39-202ENST00000424478 A0A0A0MQY5 61 aa3.13□□□□□ -1.91
PRPF39-202ENST00000424478 KRTAP4-2Q9BYR5 136 aa3.07□□□□□ -1.92
PRPF39-202ENST00000424478 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.93
PRPF39-202ENST00000424478 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
PRPF39-202ENST00000424478 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
PRPF39-202ENST00000424478 INE1O15225 51 aa2.94□□□□□ -1.94
PRPF39-202ENST00000424478 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
PRPF39-202ENST00000424478 AHNAKQ09666 5890 aaKnown RBP2.82□□□□□ -1.96
PRPF39-202ENST00000424478 PRM1P04553 51 aa2.79□□□□□ -1.96
PRPF39-202ENST00000424478 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-202ENST00000424478 KRTAP21-2Q3LI59 83 aa2.65□□□□□ -1.99
PRPF39-202ENST00000424478 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
PRPF39-202ENST00000424478 KRTAP4-4Q9BYR3 166 aa2.53□□□□□ -2.01
PRPF39-202ENST00000424478 LCE1FQ5T754 118 aa2.37□□□□□ -2.03
PRPF39-202ENST00000424478 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
PRPF39-202ENST00000424478 PHGR1C9JFL3 82 aa2.3□□□□□ -2.04
PRPF39-202ENST00000424478 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
PRPF39-202ENST00000424478 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms