RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 KRTAP2-1Q9BYU5 128 aa3.41□□□□□ -1.86
CD44-206ENST00000415148 MT1LQ93083 61 aa3.37□□□□□ -1.87
CD44-206ENST00000415148 MT1EP04732 61 aa3.36□□□□□ -1.87
CD44-206ENST00000415148 KRTAP19-6Q3LI70 58 aa3.35□□□□□ -1.87
CD44-206ENST00000415148 FCGBPQ9Y6R7 5405 aaPredicted RBP3.29□□□□□ -1.88
CD44-206ENST00000415148 LOC100996750A0A140TA64 210 aa3.25□□□□□ -1.89
CD44-206ENST00000415148 KRTAP4-3Q9BYR4 195 aa3.25□□□□□ -1.89
CD44-206ENST00000415148 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.24□□□□□ -1.89
CD44-206ENST00000415148 MUC12Q9UKN1 5478 aa3.23□□□□□ -1.89
CD44-206ENST00000415148 KRTAP9-7A8MTY7 169 aa3.23□□□□□ -1.89
CD44-206ENST00000415148 MACF1Q9UPN3 7388 aaKnown RBP3.18□□□□□ -1.9
CD44-206ENST00000415148 MT1GP13640 62 aa3.16□□□□□ -1.9
CD44-206ENST00000415148 KRTAP19-3Q7Z4W3 81 aa3.14□□□□□ -1.91
CD44-206ENST00000415148 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
CD44-206ENST00000415148 MT1MQ8N339 61 aa3.14□□□□□ -1.91
CD44-206ENST00000415148 KRTAP4-6Q9BYQ5 205 aa3.14□□□□□ -1.91
CD44-206ENST00000415148 SYNE2Q8WXH0 6885 aaKnown RBP3.12□□□□□ -1.91
CD44-206ENST00000415148 KRTAP12-4P60329 112 aa3.04□□□□□ -1.92
CD44-206ENST00000415148 LCE5AQ5TCM9 118 aa3.03□□□□□ -1.92
CD44-206ENST00000415148 KRTAP4-9Q9BYQ8 210 aa3□□□□□ -1.93
CD44-206ENST00000415148 KRTAP5-9P26371 169 aa2.98□□□□□ -1.93
CD44-206ENST00000415148 SYNE1Q8NF91 8797 aaKnown RBP2.98□□□□□ -1.93
CD44-206ENST00000415148 KRTAP6-3Q3LI67 103 aa2.97□□□□□ -1.93
CD44-206ENST00000415148 LCE3BQ5TA77 95 aa2.95□□□□□ -1.94
CD44-206ENST00000415148 SPRR2FQ96RM1 72 aa2.95□□□□□ -1.94
CD44-206ENST00000415148 MT1AP04731 61 aa2.93□□□□□ -1.94
CD44-206ENST00000415148 MDN1Q9NU22 5596 aa2.92□□□□□ -1.94
CD44-206ENST00000415148 NEBP20929 6669 aa2.92□□□□□ -1.94
CD44-206ENST00000415148 KRTAP9-4Q9BYQ2 154 aa2.88□□□□□ -1.95
CD44-206ENST00000415148 KRTAP6-1Q3LI64 71 aa2.85□□□□□ -1.95
CD44-206ENST00000415148 LCE1AQ5T7P2 110 aa2.85□□□□□ -1.95
CD44-206ENST00000415148 SPRR2EP22531 72 aa2.82□□□□□ -1.96
CD44-206ENST00000415148 SPRR2BP35325 72 aa2.82□□□□□ -1.96
CD44-206ENST00000415148 SPRR2AP35326 72 aa2.82□□□□□ -1.96
CD44-206ENST00000415148 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
CD44-206ENST00000415148 KRTAP20-1Q3LI63 56 aa2.81□□□□□ -1.96
CD44-206ENST00000415148 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
CD44-206ENST00000415148 KRTAP5-5Q701N2 237 aaPredicted RBP2.79□□□□□ -1.96
CD44-206ENST00000415148 KRTAP9-9Q9BYP9 154 aa2.79□□□□□ -1.96
CD44-206ENST00000415148 LCE3EQ5T5B0 92 aa2.77□□□□□ -1.97
CD44-206ENST00000415148 LCE4AQ5TA78 99 aa2.75□□□□□ -1.97
CD44-206ENST00000415148 OBSCNQ5VST9 7968 aa2.73□□□□□ -1.97
CD44-206ENST00000415148 PRM1P04553 51 aa2.73□□□□□ -1.97
CD44-206ENST00000415148 SPRR2DP22532 72 aa2.72□□□□□ -1.97
CD44-206ENST00000415148 KRTAP6-2Q3LI66 62 aa2.61□□□□□ -1.99
CD44-206ENST00000415148 LCE1DQ5T752 114 aa2.61□□□□□ -1.99
CD44-206ENST00000415148 KRTAP2-2Q9BYT5 123 aa2.6□□□□□ -1.99
CD44-206ENST00000415148 MT3P25713 68 aa2.57□□□□□ -2
CD44-206ENST00000415148 LCE1FQ5T754 118 aa2.54□□□□□ -2
CD44-206ENST00000415148 KRTAP5-4Q6L8H1 288 aa2.46□□□□□ -2.01
CD44-206ENST00000415148 GPR98Q8WXG9 6306 aa2.45□□□□□ -2.02
CD44-206ENST00000415148 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
CD44-206ENST00000415148 KRTAP4-11Q9BYQ6 195 aa2.44□□□□□ -2.02
CD44-206ENST00000415148 MT4P47944 62 aa2.36□□□□□ -2.03
CD44-206ENST00000415148 HMCN1Q96RW7 5635 aa2.36□□□□□ -2.03
CD44-206ENST00000415148 KRTAP20-2Q3LI61 65 aa2.3□□□□□ -2.04
CD44-206ENST00000415148 KRTAP5-2Q701N4 177 aa2.29□□□□□ -2.04
CD44-206ENST00000415148 AHNAK2Q8IVF2 5795 aa2.29□□□□□ -2.04
CD44-206ENST00000415148 KRTAP5-3Q6L8H2 238 aa2.23□□□□□ -2.05
CD44-206ENST00000415148 MUC5ACP98088 5654 aa2.23□□□□□ -2.05
CD44-206ENST00000415148 KRTAP5-10Q6L8G5 202 aa2.22□□□□□ -2.05
CD44-206ENST00000415148 LCE1EQ5T753 118 aa2.15□□□□□ -2.07
CD44-206ENST00000415148 KRTAP5-7Q6L8G8 165 aa2.14□□□□□ -2.07
CD44-206ENST00000415148 KRTAP5-1Q6L8H4 278 aa2.03□□□□□ -2.08
CD44-206ENST00000415148 LCE1BQ5T7P3 118 aa2.02□□□□□ -2.09
CD44-206ENST00000415148 LCE1CQ5T751 118 aa1.99□□□□□ -2.09
CD44-206ENST00000415148 KRTAP5-8O75690 187 aa1.96□□□□□ -2.1
CD44-206ENST00000415148 MUC5BQ9HC84 5762 aaPredicted RBP1.9□□□□□ -2.1
CD44-206ENST00000415148 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.11
CD44-206ENST00000415148 AHNAKQ09666 5890 aaKnown RBP1.89□□□□□ -2.11
CD44-206ENST00000415148 KRTAP21-2Q3LI59 83 aa1.85□□□□□ -2.11
CD44-206ENST00000415148 MUC19Q7Z5P9 8384 aa1.77□□□□□ -2.13
CD44-206ENST00000415148 KRTAP4-4Q9BYR3 166 aa1.76□□□□□ -2.13
CD44-206ENST00000415148 KRTAP21-1Q3LI58 79 aa1.71□□□□□ -2.14
CD44-206ENST00000415148 KRTAP5-11Q6L8G4 156 aa1.69□□□□□ -2.14
CD44-206ENST00000415148 PHGR1C9JFL3 82 aa1.45□□□□□ -2.18
CD44-206ENST00000415148 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 89 ms