RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 MT1LQ93083 61 aa5.1□□□□□ -1.59
SF3B1-204ENST00000414963 KRTAP15-1Q3LI76 137 aa5.09□□□□□ -1.59
SF3B1-204ENST00000414963 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
SF3B1-204ENST00000414963 SPRR2EP22531 72 aa5.07□□□□□ -1.6
SF3B1-204ENST00000414963 SPRR2BP35325 72 aa5.07□□□□□ -1.6
SF3B1-204ENST00000414963 SPRR2AP35326 72 aa5.07□□□□□ -1.6
SF3B1-204ENST00000414963 KRTAP19-4Q3LI73 84 aa5.05□□□□□ -1.6
SF3B1-204ENST00000414963 MT1GP13640 62 aa5.04□□□□□ -1.6
SF3B1-204ENST00000414963 LCE5AQ5TCM9 118 aa5.04□□□□□ -1.6
SF3B1-204ENST00000414963 KRTAP9-9Q9BYP9 154 aa5.04□□□□□ -1.6
SF3B1-204ENST00000414963 KRTAP9-4Q9BYQ2 154 aa5.04□□□□□ -1.6
SF3B1-204ENST00000414963 MDN1Q9NU22 5596 aa5.04□□□□□ -1.6
SF3B1-204ENST00000414963 NEBP20929 6669 aa5□□□□□ -1.61
SF3B1-204ENST00000414963 LCE3BQ5TA77 95 aa4.98□□□□□ -1.61
SF3B1-204ENST00000414963 KRTAP4-12Q9BQ66 201 aa4.97□□□□□ -1.61
SF3B1-204ENST00000414963 MT1MQ8N339 61 aa4.94□□□□□ -1.62
SF3B1-204ENST00000414963 SVIPQ8NHG7 77 aa4.92□□□□□ -1.62
SF3B1-204ENST00000414963 LCE3CQ5T5A8 94 aa4.9□□□□□ -1.63
SF3B1-204ENST00000414963 SPRR2DP22532 72 aa4.89□□□□□ -1.63
SF3B1-204ENST00000414963 KRTAP4-7Q9BYR0 210 aa4.85□□□□□ -1.63
SF3B1-204ENST00000414963 KRTAP4-3Q9BYR4 195 aa4.79□□□□□ -1.64
SF3B1-204ENST00000414963 KRTAP2-3P0C7H8 128 aa4.75□□□□□ -1.65
SF3B1-204ENST00000414963 KRTAP2-4Q9BYR9 128 aa4.75□□□□□ -1.65
SF3B1-204ENST00000414963 KRTAP20-1Q3LI63 56 aa4.7□□□□□ -1.66
SF3B1-204ENST00000414963 KRTAP4-2Q9BYR5 136 aa4.68□□□□□ -1.66
SF3B1-204ENST00000414963 SPRR5A0A1B0GTR4 108 aa4.67□□□□□ -1.66
SF3B1-204ENST00000414963 LCE1DQ5T752 114 aa4.66□□□□□ -1.66
SF3B1-204ENST00000414963 DSTQ03001 7570 aaKnown RBP4.63□□□□□ -1.67
SF3B1-204ENST00000414963 KRTAP4-9Q9BYQ8 210 aa4.62□□□□□ -1.67
SF3B1-204ENST00000414963 KRTAP2-2Q9BYT5 123 aa4.62□□□□□ -1.67
SF3B1-204ENST00000414963 KRTAP2-1Q9BYU5 128 aa4.62□□□□□ -1.67
SF3B1-204ENST00000414963 KRTAP9-6A8MVA2 160 aa4.61□□□□□ -1.67
SF3B1-204ENST00000414963 KRTAP5-5Q701N2 237 aaPredicted RBP4.51□□□□□ -1.69
SF3B1-204ENST00000414963 KRTAP5-3Q6L8H2 238 aa4.46□□□□□ -1.7
SF3B1-204ENST00000414963 KRTAP5-4Q6L8H1 288 aa4.44□□□□□ -1.7
SF3B1-204ENST00000414963 LCE4AQ5TA78 99 aa4.4□□□□□ -1.71
SF3B1-204ENST00000414963 KRTAP4-11Q9BYQ6 195 aa4.39□□□□□ -1.71
SF3B1-204ENST00000414963 MT1AP04731 61 aa4.34□□□□□ -1.71
SF3B1-204ENST00000414963 LUZP6Q538Z0 58 aa4.33□□□□□ -1.72
SF3B1-204ENST00000414963 KRTAP6-1Q3LI64 71 aa4.28□□□□□ -1.72
SF3B1-204ENST00000414963 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
SF3B1-204ENST00000414963 MT4P47944 62 aa4.22□□□□□ -1.73
SF3B1-204ENST00000414963 HMCN1Q96RW7 5635 aa4.14□□□□□ -1.75
SF3B1-204ENST00000414963 SYNE1Q8NF91 8797 aaKnown RBP4.12□□□□□ -1.75
SF3B1-204ENST00000414963 KRTAP20-2Q3LI61 65 aa4.12□□□□□ -1.75
SF3B1-204ENST00000414963 NDUFAF8A1L188 74 aa4.02□□□□□ -1.77
SF3B1-204ENST00000414963 KRTAP6-2Q3LI66 62 aa3.98□□□□□ -1.77
SF3B1-204ENST00000414963 KRTAP5-2Q701N4 177 aa3.98□□□□□ -1.77
SF3B1-204ENST00000414963 MT3P25713 68 aa3.95□□□□□ -1.78
SF3B1-204ENST00000414963 AHNAK2Q8IVF2 5795 aa3.78□□□□□ -1.81
SF3B1-204ENST00000414963 H3BS24 57 aa3.74□□□□□ -1.81
SF3B1-204ENST00000414963 KRTAP5-10Q6L8G5 202 aa3.68□□□□□ -1.82
SF3B1-204ENST00000414963 LCE3DQ9BYE3 92 aa3.63□□□□□ -1.83
SF3B1-204ENST00000414963 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
SF3B1-204ENST00000414963 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
SF3B1-204ENST00000414963 OBSCNQ5VST9 7968 aa3.51□□□□□ -1.85
SF3B1-204ENST00000414963 KRTAP5-8O75690 187 aa3.51□□□□□ -1.85
SF3B1-204ENST00000414963 LCE3EQ5T5B0 92 aa3.5□□□□□ -1.85
SF3B1-204ENST00000414963 A0A0A0MQY5 61 aa3.48□□□□□ -1.85
SF3B1-204ENST00000414963 KRTAP5-7Q6L8G8 165 aa3.47□□□□□ -1.85
SF3B1-204ENST00000414963 KRTAP5-1Q6L8H4 278 aa3.46□□□□□ -1.86
SF3B1-204ENST00000414963 INE1O15225 51 aa3.37□□□□□ -1.87
SF3B1-204ENST00000414963 MUC5ACP98088 5654 aa3.32□□□□□ -1.88
SF3B1-204ENST00000414963 LCE1CQ5T751 118 aa3.27□□□□□ -1.89
SF3B1-204ENST00000414963 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
SF3B1-204ENST00000414963 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.25□□□□□ -1.89
SF3B1-204ENST00000414963 MUC5BQ9HC84 5762 aaPredicted RBP3.04□□□□□ -1.92
SF3B1-204ENST00000414963 KRTAP5-11Q6L8G4 156 aa3.04□□□□□ -1.92
SF3B1-204ENST00000414963 AHNAKQ09666 5890 aaKnown RBP2.97□□□□□ -1.93
SF3B1-204ENST00000414963 PRM1P04553 51 aa2.91□□□□□ -1.94
SF3B1-204ENST00000414963 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
SF3B1-204ENST00000414963 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
SF3B1-204ENST00000414963 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
SF3B1-204ENST00000414963 PHGR1C9JFL3 82 aa2.5□□□□□ -2.01
SF3B1-204ENST00000414963 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.08
SF3B1-204ENST00000414963 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
SF3B1-204ENST00000414963 MUC16Q8WXI7 14507 aa1.59□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 19.1 ms