RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PP632Q6XCG6 107 aa2.95□□□□□ -1.94
USP40-202ENST00000409945 S4R3F8 94 aa2.95□□□□□ -1.94
USP40-202ENST00000409945 MT1FP04733 61 aa2.93□□□□□ -1.94
USP40-202ENST00000409945 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
USP40-202ENST00000409945 UQCR11O14957 56 aa2.91□□□□□ -1.94
USP40-202ENST00000409945 PRO2289Q9P1D8 64 aa2.91□□□□□ -1.94
USP40-202ENST00000409945 SPINT4Q6UDR6 99 aa2.9□□□□□ -1.95
USP40-202ENST00000409945 SPATA8Q6RVD6 105 aa2.89□□□□□ -1.95
USP40-202ENST00000409945 USH2AO75445 5202 aa2.87□□□□□ -1.95
USP40-202ENST00000409945 SSPOA2VEC9 5147 aa2.83□□□□□ -1.96
USP40-202ENST00000409945 CRIPTQ9P021 101 aa2.83□□□□□ -1.96
USP40-202ENST00000409945 H0YAA0 97 aa2.8□□□□□ -1.96
USP40-202ENST00000409945 KRTAP19-6Q3LI70 58 aa2.79□□□□□ -1.96
USP40-202ENST00000409945 FCGBPQ9Y6R7 5405 aaPredicted RBP2.77□□□□□ -1.97
USP40-202ENST00000409945 SPRR2GQ9BYE4 73 aa2.77□□□□□ -1.97
USP40-202ENST00000409945 KRTAP4-3Q9BYR4 195 aa2.76□□□□□ -1.97
USP40-202ENST00000409945 KRTAP19-8Q3LI54 63 aa2.73□□□□□ -1.97
USP40-202ENST00000409945 PLAC4Q8WY50 150 aa2.71□□□□□ -1.98
USP40-202ENST00000409945 MACF1Q9UPN3 7388 aaKnown RBP2.7□□□□□ -1.98
USP40-202ENST00000409945 M0QZ58 72 aa2.7□□□□□ -1.98
USP40-202ENST00000409945 MT1BP07438 61 aa2.7□□□□□ -1.98
USP40-202ENST00000409945 KRTAP5-2Q701N4 177 aa2.7□□□□□ -1.98
USP40-202ENST00000409945 KRTAP20-1Q3LI63 56 aa2.69□□□□□ -1.98
USP40-202ENST00000409945 KRTAP13-4Q3LI77 160 aa2.69□□□□□ -1.98
USP40-202ENST00000409945 SYNE2Q8WXH0 6885 aaKnown RBP2.68□□□□□ -1.98
USP40-202ENST00000409945 A0A0D9SG42 100 aa2.67□□□□□ -1.98
USP40-202ENST00000409945 KRTAP6-3Q3LI67 103 aa2.67□□□□□ -1.98
USP40-202ENST00000409945 LCE1CQ5T751 118 aa2.67□□□□□ -1.98
USP40-202ENST00000409945 LCE1BQ5T7P3 118 aa2.67□□□□□ -1.98
USP40-202ENST00000409945 NEBP20929 6669 aa2.64□□□□□ -1.99
USP40-202ENST00000409945 KRTAP12-1P59990 96 aa2.62□□□□□ -1.99
USP40-202ENST00000409945 INE1O15225 51 aa2.61□□□□□ -1.99
USP40-202ENST00000409945 KRTAP5-8O75690 187 aa2.54□□□□□ -2
USP40-202ENST00000409945 MT1XP80297 61 aa2.54□□□□□ -2
USP40-202ENST00000409945 KRTAP8-1Q8IUC2 63 aa2.52□□□□□ -2.01
USP40-202ENST00000409945 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
USP40-202ENST00000409945 KRTAP12-3P60328 96 aa2.51□□□□□ -2.01
USP40-202ENST00000409945 MUC12Q9UKN1 5478 aa2.49□□□□□ -2.01
USP40-202ENST00000409945 KRTAP2-3P0C7H8 128 aa2.49□□□□□ -2.01
USP40-202ENST00000409945 SPRR2FQ96RM1 72 aa2.49□□□□□ -2.01
USP40-202ENST00000409945 KRTAP2-4Q9BYR9 128 aa2.49□□□□□ -2.01
USP40-202ENST00000409945 C10orf95Q9H7T3 257 aa2.46□□□□□ -2.02
USP40-202ENST00000409945 KMT2DO14686 5537 aa2.46□□□□□ -2.02
USP40-202ENST00000409945 MDN1Q9NU22 5596 aa2.45□□□□□ -2.02
USP40-202ENST00000409945 SPRR2EP22531 72 aa2.44□□□□□ -2.02
USP40-202ENST00000409945 SPRR2BP35325 72 aa2.44□□□□□ -2.02
USP40-202ENST00000409945 SPRR2AP35326 72 aa2.44□□□□□ -2.02
USP40-202ENST00000409945 TNP1P09430 55 aa2.39□□□□□ -2.03
USP40-202ENST00000409945 KRTAP2-1Q9BYU5 128 aa2.38□□□□□ -2.03
USP40-202ENST00000409945 SPRR2DP22532 72 aa2.37□□□□□ -2.03
USP40-202ENST00000409945 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
USP40-202ENST00000409945 KRTAP12-4P60329 112 aa2.34□□□□□ -2.04
USP40-202ENST00000409945 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
USP40-202ENST00000409945 MT1EP04732 61 aa2.27□□□□□ -2.05
USP40-202ENST00000409945 KRTAP19-7Q3SYF9 63 aa2.26□□□□□ -2.05
USP40-202ENST00000409945 KRTAP19-3Q7Z4W3 81 aa2.26□□□□□ -2.05
USP40-202ENST00000409945 KRTAP19-5Q3LI72 72 aa2.25□□□□□ -2.05
USP40-202ENST00000409945 MT1GP13640 62 aa2.24□□□□□ -2.05
USP40-202ENST00000409945 DSTQ03001 7570 aaKnown RBP2.19□□□□□ -2.06
USP40-202ENST00000409945 MT1LQ93083 61 aa2.17□□□□□ -2.06
USP40-202ENST00000409945 MT1MQ8N339 61 aa2.16□□□□□ -2.06
USP40-202ENST00000409945 AHNAK2Q8IVF2 5795 aa2.11□□□□□ -2.07
USP40-202ENST00000409945 KRTAP5-10Q6L8G5 202 aa2.08□□□□□ -2.08
USP40-202ENST00000409945 MT4P47944 62 aa2.05□□□□□ -2.08
USP40-202ENST00000409945 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
USP40-202ENST00000409945 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
USP40-202ENST00000409945 KRTAP20-2Q3LI61 65 aa1.91□□□□□ -2.1
USP40-202ENST00000409945 MUC5BQ9HC84 5762 aaPredicted RBP1.89□□□□□ -2.11
USP40-202ENST00000409945 SYNE1Q8NF91 8797 aaKnown RBP1.89□□□□□ -2.11
USP40-202ENST00000409945 MT1AP04731 61 aa1.87□□□□□ -2.11
USP40-202ENST00000409945 KRTAP6-1Q3LI64 71 aa1.82□□□□□ -2.12
USP40-202ENST00000409945 MUC5ACP98088 5654 aa1.8□□□□□ -2.12
USP40-202ENST00000409945 KRTAP6-2Q3LI66 62 aa1.75□□□□□ -2.13
USP40-202ENST00000409945 PRM1P04553 51 aa1.38□□□□□ -2.19
USP40-202ENST00000409945 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
USP40-202ENST00000409945 KRTAP21-1Q3LI58 79 aa1□□□□□ -2.25
USP40-202ENST00000409945 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 110.8 ms