RNA–Protein interactions for RNA: ENST00000409739.2

TRAF3IP1-203, Transcript of TRAF3 interacting protein 1, humanhuman

TSL 3

Gene TRAF3IP1, Length 1,070 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP1-203ENST00000409739 RPS28P62857 69 aaKnown RBP11.2□□□□□ -0.62
TRAF3IP1-203ENST00000409739 MT1GP13640 62 aa11.16□□□□□ -0.62
TRAF3IP1-203ENST00000409739 A6NED7 52 aa11.13□□□□□ -0.63
TRAF3IP1-203ENST00000409739 MT1LQ93083 61 aa11.13□□□□□ -0.63
TRAF3IP1-203ENST00000409739 KRTAP25-1Q3LHN0 102 aa11.05□□□□□ -0.64
TRAF3IP1-203ENST00000409739 PP632Q6XCG6 107 aa11.05□□□□□ -0.64
TRAF3IP1-203ENST00000409739 MT1MQ8N339 61 aa11.01□□□□□ -0.65
TRAF3IP1-203ENST00000409739 DSTQ03001 7570 aaKnown RBP10.96□□□□□ -0.65
TRAF3IP1-203ENST00000409739 KRTAP12-3P60328 96 aa10.95□□□□□ -0.66
TRAF3IP1-203ENST00000409739 KRTAP4-3Q9BYR4 195 aa10.74□□□□□ -0.69
TRAF3IP1-203ENST00000409739 CDC42SE1Q9NRR8 79 aa10.71□□□□□ -0.69
TRAF3IP1-203ENST00000409739 GPR98Q8WXG9 6306 aa10.7□□□□□ -0.7
TRAF3IP1-203ENST00000409739 KRTAP23-1A1A580 65 aa10.65□□□□□ -0.7
TRAF3IP1-203ENST00000409739 KRTAP4-7Q9BYR0 210 aa10.61□□□□□ -0.71
TRAF3IP1-203ENST00000409739 ROMO1P60602 79 aa10.56□□□□□ -0.72
TRAF3IP1-203ENST00000409739 KRTAP4-9Q9BYQ8 210 aa10.51□□□□□ -0.73
TRAF3IP1-203ENST00000409739 LCE4AQ5TA78 99 aa10.4□□□□□ -0.74
TRAF3IP1-203ENST00000409739 KRTAP15-1Q3LI76 137 aa10.34□□□□□ -0.75
TRAF3IP1-203ENST00000409739 LCE1DQ5T752 114 aa10.33□□□□□ -0.76
TRAF3IP1-203ENST00000409739 KRTAP19-4Q3LI73 84 aa10.31□□□□□ -0.76
TRAF3IP1-203ENST00000409739 KRTAP5-4Q6L8H1 288 aa10.3□□□□□ -0.76
TRAF3IP1-203ENST00000409739 MT4P47944 62 aa10.25□□□□□ -0.77
TRAF3IP1-203ENST00000409739 LCE3CQ5T5A8 94 aa10.12□□□□□ -0.79
TRAF3IP1-203ENST00000409739 KRTAP5-5Q701N2 237 aaPredicted RBP10.07□□□□□ -0.8
TRAF3IP1-203ENST00000409739 HMCN1Q96RW7 5635 aa10.06□□□□□ -0.8
TRAF3IP1-203ENST00000409739 LOC100996750A0A140TA64 210 aa10.03□□□□□ -0.8
TRAF3IP1-203ENST00000409739 KRTAP4-6Q9BYQ5 205 aa10.01□□□□□ -0.81
TRAF3IP1-203ENST00000409739 BRK1Q8WUW1 75 aa9.91□□□□□ -0.82
TRAF3IP1-203ENST00000409739 AHNAK2Q8IVF2 5795 aa9.79□□□□□ -0.84
TRAF3IP1-203ENST00000409739 KRTAP20-2Q3LI61 65 aa9.7□□□□□ -0.86
TRAF3IP1-203ENST00000409739 KRTAP12-4P60329 112 aa9.67□□□□□ -0.86
TRAF3IP1-203ENST00000409739 SPRR5A0A1B0GTR4 108 aa9.66□□□□□ -0.86
TRAF3IP1-203ENST00000409739 KRTAP5-10Q6L8G5 202 aa9.64□□□□□ -0.87
TRAF3IP1-203ENST00000409739 KRTAP9-6A8MVA2 160 aa9.57□□□□□ -0.88
TRAF3IP1-203ENST00000409739 SYNE1Q8NF91 8797 aaKnown RBP9.56□□□□□ -0.88
TRAF3IP1-203ENST00000409739 MT1AP04731 61 aa9.47□□□□□ -0.89
TRAF3IP1-203ENST00000409739 KRTAP6-1Q3LI64 71 aa9.41□□□□□ -0.9
TRAF3IP1-203ENST00000409739 KRTAP5-3Q6L8H2 238 aa9.4□□□□□ -0.9
TRAF3IP1-203ENST00000409739 KRTAP5-7Q6L8G8 165 aa9.34□□□□□ -0.91
TRAF3IP1-203ENST00000409739 PMAIP1Q13794 54 aa9.3□□□□□ -0.92
TRAF3IP1-203ENST00000409739 KRTAP5-2Q701N4 177 aa9.1□□□□□ -0.95
TRAF3IP1-203ENST00000409739 KRTAP9-4Q9BYQ2 154 aa9.1□□□□□ -0.95
TRAF3IP1-203ENST00000409739 PRAC1Q96KF2 57 aa8.95□□□□□ -0.98
TRAF3IP1-203ENST00000409739 KRTAP6-2Q3LI66 62 aa8.91□□□□□ -0.98
TRAF3IP1-203ENST00000409739 PRO0628Q9UI54 55 aa8.85□□□□□ -0.99
TRAF3IP1-203ENST00000409739 KRTAP4-11Q9BYQ6 195 aa8.75□□□□□ -1.01
TRAF3IP1-203ENST00000409739 MT3P25713 68 aa8.62□□□□□ -1.03
TRAF3IP1-203ENST00000409739 KRTAP5-8O75690 187 aa8.47□□□□□ -1.05
TRAF3IP1-203ENST00000409739 KTN1-AS1Q86SY8 53 aa8.43□□□□□ -1.06
TRAF3IP1-203ENST00000409739 OBSCNQ5VST9 7968 aa8.35□□□□□ -1.07
TRAF3IP1-203ENST00000409739 AHNAKQ09666 5890 aaKnown RBP8.21□□□□□ -1.09
TRAF3IP1-203ENST00000409739 MUC5ACP98088 5654 aa8.16□□□□□ -1.1
TRAF3IP1-203ENST00000409739 MUC5BQ9HC84 5762 aaPredicted RBP8.15□□□□□ -1.1
TRAF3IP1-203ENST00000409739 KRTAP5-1Q6L8H4 278 aa8.09□□□□□ -1.11
TRAF3IP1-203ENST00000409739 SVIPQ8NHG7 77 aa8.05□□□□□ -1.12
TRAF3IP1-203ENST00000409739 KRTAP9-9Q9BYP9 154 aa7.95□□□□□ -1.14
TRAF3IP1-203ENST00000409739 LCE1EQ5T753 118 aa7.83□□□□□ -1.16
TRAF3IP1-203ENST00000409739 LUZP6Q538Z0 58 aa7.45□□□□□ -1.22
TRAF3IP1-203ENST00000409739 KRTAP4-2Q9BYR5 136 aa7.41□□□□□ -1.22
TRAF3IP1-203ENST00000409739 LCE1BQ5T7P3 118 aa7.36□□□□□ -1.23
TRAF3IP1-203ENST00000409739 LCE3DQ9BYE3 92 aa7.35□□□□□ -1.23
TRAF3IP1-203ENST00000409739 LCE1CQ5T751 118 aa7.28□□□□□ -1.24
TRAF3IP1-203ENST00000409739 LCE3EQ5T5B0 92 aa6.97□□□□□ -1.29
TRAF3IP1-203ENST00000409739 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.69□□□□□ -1.34
TRAF3IP1-203ENST00000409739 KRTAP5-11Q6L8G4 156 aa6.59□□□□□ -1.35
TRAF3IP1-203ENST00000409739 KRTAP4-12Q9BQ66 201 aa6.57□□□□□ -1.36
TRAF3IP1-203ENST00000409739 LCE1FQ5T754 118 aa6.3□□□□□ -1.4
TRAF3IP1-203ENST00000409739 NDUFAF8A1L188 74 aa6.24□□□□□ -1.41
TRAF3IP1-203ENST00000409739 KRTAP21-2Q3LI59 83 aa6.19□□□□□ -1.42
TRAF3IP1-203ENST00000409739 PHGR1C9JFL3 82 aa5.68□□□□□ -1.5
TRAF3IP1-203ENST00000409739 KRTAP4-4Q9BYR3 166 aa5.62□□□□□ -1.51
TRAF3IP1-203ENST00000409739 PRM1P04553 51 aa5.44□□□□□ -1.54
TRAF3IP1-203ENST00000409739 MUC19Q7Z5P9 8384 aa5.12□□□□□ -1.59
TRAF3IP1-203ENST00000409739 INE1O15225 51 aa5.04□□□□□ -1.6
TRAF3IP1-203ENST00000409739 A0A0A0MQY5 61 aa5□□□□□ -1.61
TRAF3IP1-203ENST00000409739 H3BS24 57 aa4.93□□□□□ -1.62
TRAF3IP1-203ENST00000409739 KRTAP21-1Q3LI58 79 aa4.32□□□□□ -1.72
TRAF3IP1-203ENST00000409739 MUC16Q8WXI7 14507 aa3.7□□□□□ -1.82
Retrieved 78 of 20,778 RNA–protein pairs in 77.5 ms