RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 K7ERS5 55 aa10.39□□□□□ -0.75
HMGB1-205ENST00000399494 MT1GP13640 62 aa10.35□□□□□ -0.75
HMGB1-205ENST00000399494 KRTAP19-5Q3LI72 72 aa10.35□□□□□ -0.75
HMGB1-205ENST00000399494 RPS28P62857 69 aaKnown RBP10.34□□□□□ -0.75
HMGB1-205ENST00000399494 LCE3AQ5TA76 89 aa10.3□□□□□ -0.76
HMGB1-205ENST00000399494 A6NED7 52 aa10.29□□□□□ -0.76
HMGB1-205ENST00000399494 LCE4AQ5TA78 99 aa10.28□□□□□ -0.76
HMGB1-205ENST00000399494 HMCN1Q96RW7 5635 aa10.24□□□□□ -0.77
HMGB1-205ENST00000399494 MT4P47944 62 aa10.23□□□□□ -0.77
HMGB1-205ENST00000399494 PP632Q6XCG6 107 aa10.21□□□□□ -0.77
HMGB1-205ENST00000399494 MT1MQ8N339 61 aa10.15□□□□□ -0.78
HMGB1-205ENST00000399494 KRTAP25-1Q3LHN0 102 aa10.08□□□□□ -0.8
HMGB1-205ENST00000399494 MT1LQ93083 61 aa10.06□□□□□ -0.8
HMGB1-205ENST00000399494 AHNAK2Q8IVF2 5795 aa10.05□□□□□ -0.8
HMGB1-205ENST00000399494 KRTAP5-4Q6L8H1 288 aa10.01□□□□□ -0.81
HMGB1-205ENST00000399494 KRTAP5-10Q6L8G5 202 aa9.97□□□□□ -0.81
HMGB1-205ENST00000399494 KRTAP4-3Q9BYR4 195 aa9.96□□□□□ -0.82
HMGB1-205ENST00000399494 KRTAP4-6Q9BYQ5 205 aa9.93□□□□□ -0.82
HMGB1-205ENST00000399494 KRTAP12-3P60328 96 aa9.92□□□□□ -0.82
HMGB1-205ENST00000399494 CDC42SE1Q9NRR8 79 aa9.86□□□□□ -0.83
HMGB1-205ENST00000399494 ROMO1P60602 79 aa9.7□□□□□ -0.86
HMGB1-205ENST00000399494 KRTAP23-1A1A580 65 aa9.68□□□□□ -0.86
HMGB1-205ENST00000399494 KRTAP5-7Q6L8G8 165 aa9.66□□□□□ -0.86
HMGB1-205ENST00000399494 KRTAP5-3Q6L8H2 238 aa9.62□□□□□ -0.87
HMGB1-205ENST00000399494 KRTAP4-7Q9BYR0 210 aa9.57□□□□□ -0.88
HMGB1-205ENST00000399494 KRTAP20-2Q3LI61 65 aa9.47□□□□□ -0.89
HMGB1-205ENST00000399494 KRTAP15-1Q3LI76 137 aa9.38□□□□□ -0.91
HMGB1-205ENST00000399494 SPRR5A0A1B0GTR4 108 aa9.37□□□□□ -0.91
HMGB1-205ENST00000399494 KRTAP5-5Q701N2 237 aaPredicted RBP9.37□□□□□ -0.91
HMGB1-205ENST00000399494 KRTAP19-4Q3LI73 84 aa9.35□□□□□ -0.91
HMGB1-205ENST00000399494 KRTAP12-4P60329 112 aa9.23□□□□□ -0.93
HMGB1-205ENST00000399494 BRK1Q8WUW1 75 aa9.22□□□□□ -0.93
HMGB1-205ENST00000399494 LCE3CQ5T5A8 94 aa9.16□□□□□ -0.94
HMGB1-205ENST00000399494 SYNE1Q8NF91 8797 aaKnown RBP9.13□□□□□ -0.95
HMGB1-205ENST00000399494 LOC100996750A0A140TA64 210 aa9.09□□□□□ -0.95
HMGB1-205ENST00000399494 KRTAP4-11Q9BYQ6 195 aa8.78□□□□□ -1
HMGB1-205ENST00000399494 PMAIP1Q13794 54 aa8.67□□□□□ -1.02
HMGB1-205ENST00000399494 KRTAP5-2Q701N4 177 aa8.67□□□□□ -1.02
HMGB1-205ENST00000399494 KRTAP9-6A8MVA2 160 aa8.58□□□□□ -1.04
HMGB1-205ENST00000399494 MT1AP04731 61 aa8.54□□□□□ -1.04
HMGB1-205ENST00000399494 KRTAP6-1Q3LI64 71 aa8.54□□□□□ -1.04
HMGB1-205ENST00000399494 KRTAP5-8O75690 187 aa8.52□□□□□ -1.05
HMGB1-205ENST00000399494 MUC5ACP98088 5654 aa8.38□□□□□ -1.07
HMGB1-205ENST00000399494 AHNAKQ09666 5890 aaKnown RBP8.38□□□□□ -1.07
HMGB1-205ENST00000399494 MUC5BQ9HC84 5762 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-205ENST00000399494 KRTAP9-4Q9BYQ2 154 aa8.34□□□□□ -1.07
HMGB1-205ENST00000399494 KRTAP6-2Q3LI66 62 aa8.27□□□□□ -1.09
HMGB1-205ENST00000399494 PRO0628Q9UI54 55 aa8.27□□□□□ -1.09
HMGB1-205ENST00000399494 OBSCNQ5VST9 7968 aa8.25□□□□□ -1.09
HMGB1-205ENST00000399494 PRAC1Q96KF2 57 aa8.25□□□□□ -1.09
HMGB1-205ENST00000399494 KRTAP9-9Q9BYP9 154 aa8.14□□□□□ -1.11
HMGB1-205ENST00000399494 KRTAP5-1Q6L8H4 278 aa7.89□□□□□ -1.15
HMGB1-205ENST00000399494 KTN1-AS1Q86SY8 53 aa7.86□□□□□ -1.15
HMGB1-205ENST00000399494 MT3P25713 68 aa7.85□□□□□ -1.15
HMGB1-205ENST00000399494 SVIPQ8NHG7 77 aa7.58□□□□□ -1.2
HMGB1-205ENST00000399494 LCE1EQ5T753 118 aa7.34□□□□□ -1.23
HMGB1-205ENST00000399494 KRTAP4-2Q9BYR5 136 aa7□□□□□ -1.29
HMGB1-205ENST00000399494 LUZP6Q538Z0 58 aa6.99□□□□□ -1.29
HMGB1-205ENST00000399494 LCE1BQ5T7P3 118 aa6.94□□□□□ -1.3
HMGB1-205ENST00000399494 LCE1CQ5T751 118 aa6.82□□□□□ -1.32
HMGB1-205ENST00000399494 KRTAP4-12Q9BQ66 201 aa6.74□□□□□ -1.33
HMGB1-205ENST00000399494 LCE3DQ9BYE3 92 aa6.69□□□□□ -1.34
HMGB1-205ENST00000399494 LCE3EQ5T5B0 92 aa6.35□□□□□ -1.39
HMGB1-205ENST00000399494 KRTAP5-11Q6L8G4 156 aa6.21□□□□□ -1.42
HMGB1-205ENST00000399494 LCE1FQ5T754 118 aa6.18□□□□□ -1.42
HMGB1-205ENST00000399494 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.13□□□□□ -1.43
HMGB1-205ENST00000399494 NDUFAF8A1L188 74 aa5.87□□□□□ -1.47
HMGB1-205ENST00000399494 PHGR1C9JFL3 82 aa5.81□□□□□ -1.48
HMGB1-205ENST00000399494 KRTAP21-2Q3LI59 83 aa5.66□□□□□ -1.5
HMGB1-205ENST00000399494 H3BS24 57 aa5.57□□□□□ -1.52
HMGB1-205ENST00000399494 KRTAP4-4Q9BYR3 166 aa5.25□□□□□ -1.57
HMGB1-205ENST00000399494 MUC19Q7Z5P9 8384 aa5.14□□□□□ -1.59
HMGB1-205ENST00000399494 PRM1P04553 51 aa4.98□□□□□ -1.61
HMGB1-205ENST00000399494 A0A0A0MQY5 61 aa4.82□□□□□ -1.64
HMGB1-205ENST00000399494 INE1O15225 51 aa4.76□□□□□ -1.65
HMGB1-205ENST00000399494 KRTAP21-1Q3LI58 79 aa4.42□□□□□ -1.7
HMGB1-205ENST00000399494 MUC16Q8WXI7 14507 aa3.66□□□□□ -1.82
Retrieved 77 of 20,778 RNA–protein pairs in 10.8 ms