RNA–Protein interactions for RNA: ENST00000399438.7

TRAPPC13-202, Transcript of trafficking protein particle complex 13, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TRAPPC13, Length 3,221 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-202ENST00000399438 KRTAP10-7P60409 375 aaPredicted RBP2.44□□□□□ -2.02
TRAPPC13-202ENST00000399438 KRTAP4-7Q9BYR0 210 aa2.43□□□□□ -2.02
TRAPPC13-202ENST00000399438 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.42□□□□□ -2.02
TRAPPC13-202ENST00000399438 LCE3AQ5TA76 89 aa2.42□□□□□ -2.02
TRAPPC13-202ENST00000399438 SPRR2GQ9BYE4 73 aa2.4□□□□□ -2.03
TRAPPC13-202ENST00000399438 LCE3BQ5TA77 95 aa2.38□□□□□ -2.03
TRAPPC13-202ENST00000399438 KRTAP12-4P60329 112 aa2.38□□□□□ -2.03
TRAPPC13-202ENST00000399438 MT1BP07438 61 aa2.36□□□□□ -2.03
TRAPPC13-202ENST00000399438 MT1XP80297 61 aa2.34□□□□□ -2.03
TRAPPC13-202ENST00000399438 KRTAP10-5P60370 271 aa2.34□□□□□ -2.04
TRAPPC13-202ENST00000399438 KRTAP19-8Q3LI54 63 aa2.33□□□□□ -2.04
TRAPPC13-202ENST00000399438 SSPOA2VEC9 5147 aa2.3□□□□□ -2.04
TRAPPC13-202ENST00000399438 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
TRAPPC13-202ENST00000399438 LCE3DQ9BYE3 92 aa2.28□□□□□ -2.04
TRAPPC13-202ENST00000399438 KRTAP4-9Q9BYQ8 210 aa2.28□□□□□ -2.04
TRAPPC13-202ENST00000399438 KRTAP4-2Q9BYR5 136 aa2.28□□□□□ -2.04
TRAPPC13-202ENST00000399438 DSTQ03001 7570 aaKnown RBP2.27□□□□□ -2.05
TRAPPC13-202ENST00000399438 MUC12Q9UKN1 5478 aa2.26□□□□□ -2.05
TRAPPC13-202ENST00000399438 KRTAP12-3P60328 96 aa2.25□□□□□ -2.05
TRAPPC13-202ENST00000399438 KRTAP19-6Q3LI70 58 aa2.24□□□□□ -2.05
TRAPPC13-202ENST00000399438 FCGBPQ9Y6R7 5405 aaPredicted RBP2.22□□□□□ -2.05
TRAPPC13-202ENST00000399438 KRTAP19-5Q3LI72 72 aa2.22□□□□□ -2.05
TRAPPC13-202ENST00000399438 CRCT1Q9UGL9 99 aa2.22□□□□□ -2.05
TRAPPC13-202ENST00000399438 KRTAP8-1Q8IUC2 63 aa2.21□□□□□ -2.06
TRAPPC13-202ENST00000399438 OBSCNQ5VST9 7968 aa2.15□□□□□ -2.07
TRAPPC13-202ENST00000399438 SYNE1Q8NF91 8797 aaKnown RBP2.13□□□□□ -2.07
TRAPPC13-202ENST00000399438 SYNE2Q8WXH0 6885 aaKnown RBP2.13□□□□□ -2.07
TRAPPC13-202ENST00000399438 KRTAP9-6A8MVA2 160 aa2.11□□□□□ -2.07
TRAPPC13-202ENST00000399438 MACF1Q9UPN3 7388 aaKnown RBP2.11□□□□□ -2.07
TRAPPC13-202ENST00000399438 KRTAP4-11Q9BYQ6 195 aa2.1□□□□□ -2.07
TRAPPC13-202ENST00000399438 KRTAP4-3Q9BYR4 195 aa2.09□□□□□ -2.07
TRAPPC13-202ENST00000399438 KRTAP19-7Q3SYF9 63 aa2.08□□□□□ -2.08
TRAPPC13-202ENST00000399438 MDN1Q9NU22 5596 aa2.06□□□□□ -2.08
TRAPPC13-202ENST00000399438 GPR98Q8WXG9 6306 aa2.04□□□□□ -2.08
TRAPPC13-202ENST00000399438 MT1EP04732 61 aa2.01□□□□□ -2.09
TRAPPC13-202ENST00000399438 MT1LQ93083 61 aa2.01□□□□□ -2.09
TRAPPC13-202ENST00000399438 MT1GP13640 62 aa2□□□□□ -2.09
TRAPPC13-202ENST00000399438 KRTAP5-9P26371 169 aa1.99□□□□□ -2.09
TRAPPC13-202ENST00000399438 MUC5BQ9HC84 5762 aaPredicted RBP1.96□□□□□ -2.1
TRAPPC13-202ENST00000399438 SPRR2FQ96RM1 72 aa1.95□□□□□ -2.1
TRAPPC13-202ENST00000399438 MT1MQ8N339 61 aa1.89□□□□□ -2.11
TRAPPC13-202ENST00000399438 NEBP20929 6669 aa1.89□□□□□ -2.11
TRAPPC13-202ENST00000399438 SPRR2EP22531 72 aa1.88□□□□□ -2.11
TRAPPC13-202ENST00000399438 SPRR2BP35325 72 aa1.88□□□□□ -2.11
TRAPPC13-202ENST00000399438 SPRR2AP35326 72 aa1.88□□□□□ -2.11
TRAPPC13-202ENST00000399438 KRTAP19-3Q7Z4W3 81 aa1.88□□□□□ -2.11
TRAPPC13-202ENST00000399438 KRTAP2-3P0C7H8 128 aa1.86□□□□□ -2.11
TRAPPC13-202ENST00000399438 KRTAP2-4Q9BYR9 128 aa1.86□□□□□ -2.11
TRAPPC13-202ENST00000399438 KRTAP2-1Q9BYU5 128 aa1.86□□□□□ -2.11
TRAPPC13-202ENST00000399438 SPRR2DP22532 72 aa1.82□□□□□ -2.12
TRAPPC13-202ENST00000399438 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.13
TRAPPC13-202ENST00000399438 KRTAP6-1Q3LI64 71 aa1.76□□□□□ -2.13
TRAPPC13-202ENST00000399438 KRTAP20-1Q3LI63 56 aa1.75□□□□□ -2.13
TRAPPC13-202ENST00000399438 KRTAP5-5Q701N2 237 aaPredicted RBP1.68□□□□□ -2.14
TRAPPC13-202ENST00000399438 LCE1CQ5T751 118 aa1.66□□□□□ -2.14
TRAPPC13-202ENST00000399438 LCE1BQ5T7P3 118 aa1.66□□□□□ -2.14
TRAPPC13-202ENST00000399438 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.15
TRAPPC13-202ENST00000399438 KRTAP5-4Q6L8H1 288 aa1.64□□□□□ -2.15
TRAPPC13-202ENST00000399438 MT1AP04731 61 aa1.63□□□□□ -2.15
TRAPPC13-202ENST00000399438 KRTAP6-2Q3LI66 62 aa1.61□□□□□ -2.15
TRAPPC13-202ENST00000399438 PRM1P04553 51 aa1.6□□□□□ -2.15
TRAPPC13-202ENST00000399438 MT4P47944 62 aa1.58□□□□□ -2.16
TRAPPC13-202ENST00000399438 KRTAP20-2Q3LI61 65 aa1.53□□□□□ -2.16
TRAPPC13-202ENST00000399438 KRTAP5-2Q701N4 177 aa1.48□□□□□ -2.17
TRAPPC13-202ENST00000399438 AHNAK2Q8IVF2 5795 aa1.43□□□□□ -2.18
TRAPPC13-202ENST00000399438 MUC5ACP98088 5654 aa1.43□□□□□ -2.18
TRAPPC13-202ENST00000399438 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
TRAPPC13-202ENST00000399438 KRTAP4-4Q9BYR3 166 aa1.4□□□□□ -2.18
TRAPPC13-202ENST00000399438 KRTAP5-11Q6L8G4 156 aa1.39□□□□□ -2.19
TRAPPC13-202ENST00000399438 KRTAP5-1Q6L8H4 278 aa1.39□□□□□ -2.19
TRAPPC13-202ENST00000399438 MUC19Q7Z5P9 8384 aa1.39□□□□□ -2.19
TRAPPC13-202ENST00000399438 KRTAP5-10Q6L8G5 202 aa1.38□□□□□ -2.19
TRAPPC13-202ENST00000399438 KRTAP5-8O75690 187 aa1.34□□□□□ -2.19
TRAPPC13-202ENST00000399438 KRTAP21-1Q3LI58 79 aa1.26□□□□□ -2.21
TRAPPC13-202ENST00000399438 KRTAP21-2Q3LI59 83 aa1.08□□□□□ -2.24
TRAPPC13-202ENST00000399438 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
TRAPPC13-202ENST00000399438 MUC16Q8WXI7 14507 aa0.6□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 105.4 ms