RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 KRTAP2-4Q9BYR9 128 aa6.33□□□□□ -1.4
PCDHA1-202ENST00000394633 KRTAP2-1Q9BYU5 128 aa6.33□□□□□ -1.4
PCDHA1-202ENST00000394633 MT1LQ93083 61 aa6.31□□□□□ -1.4
PCDHA1-202ENST00000394633 SYNE2Q8WXH0 6885 aaKnown RBP6.31□□□□□ -1.4
PCDHA1-202ENST00000394633 MT1EP04732 61 aa6.29□□□□□ -1.4
PCDHA1-202ENST00000394633 KRTAP19-4Q3LI73 84 aa6.28□□□□□ -1.4
PCDHA1-202ENST00000394633 MUC12Q9UKN1 5478 aa6.28□□□□□ -1.4
PCDHA1-202ENST00000394633 KRTAP9-6A0A140TA67 174 aa6.25□□□□□ -1.41
PCDHA1-202ENST00000394633 SPRR2FQ96RM1 72 aa6.11□□□□□ -1.43
PCDHA1-202ENST00000394633 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.08□□□□□ -1.44
PCDHA1-202ENST00000394633 MDN1Q9NU22 5596 aa6.05□□□□□ -1.44
PCDHA1-202ENST00000394633 KRTAP5-9P26371 169 aa6.01□□□□□ -1.45
PCDHA1-202ENST00000394633 KRTAP4-3Q9BYR4 195 aa5.98□□□□□ -1.45
PCDHA1-202ENST00000394633 LOC100996750A0A140TA64 210 aa5.98□□□□□ -1.45
PCDHA1-202ENST00000394633 KRTAP19-3Q7Z4W3 81 aa5.94□□□□□ -1.46
PCDHA1-202ENST00000394633 MT1GP13640 62 aa5.9□□□□□ -1.46
PCDHA1-202ENST00000394633 MT1MQ8N339 61 aa5.87□□□□□ -1.47
PCDHA1-202ENST00000394633 KRTAP6-3Q3LI67 103 aa5.86□□□□□ -1.47
PCDHA1-202ENST00000394633 LCE5AQ5TCM9 118 aa5.86□□□□□ -1.47
PCDHA1-202ENST00000394633 DSTQ03001 7570 aaKnown RBP5.85□□□□□ -1.47
PCDHA1-202ENST00000394633 LCE1AQ5T7P2 110 aa5.84□□□□□ -1.47
PCDHA1-202ENST00000394633 SPRR2EP22531 72 aa5.78□□□□□ -1.48
PCDHA1-202ENST00000394633 SPRR2BP35325 72 aa5.78□□□□□ -1.48
PCDHA1-202ENST00000394633 SPRR2AP35326 72 aa5.78□□□□□ -1.48
PCDHA1-202ENST00000394633 KRTAP9-7A8MTY7 169 aa5.74□□□□□ -1.49
PCDHA1-202ENST00000394633 KRTAP12-4P60329 112 aa5.6□□□□□ -1.51
PCDHA1-202ENST00000394633 NEBP20929 6669 aa5.58□□□□□ -1.52
PCDHA1-202ENST00000394633 SPRR2DP22532 72 aa5.55□□□□□ -1.52
PCDHA1-202ENST00000394633 LCE3BQ5TA77 95 aa5.48□□□□□ -1.53
PCDHA1-202ENST00000394633 KRTAP4-9Q9BYQ8 210 aa5.41□□□□□ -1.54
PCDHA1-202ENST00000394633 KRTAP6-1Q3LI64 71 aa5.37□□□□□ -1.55
PCDHA1-202ENST00000394633 MT1AP04731 61 aa5.35□□□□□ -1.55
PCDHA1-202ENST00000394633 KRTAP5-5Q701N2 237 aaPredicted RBP5.27□□□□□ -1.57
PCDHA1-202ENST00000394633 SYNE1Q8NF91 8797 aaKnown RBP5.25□□□□□ -1.57
PCDHA1-202ENST00000394633 LCE3DQ9BYE3 92 aa5.2□□□□□ -1.58
PCDHA1-202ENST00000394633 LCE3EQ5T5B0 92 aa5.15□□□□□ -1.59
PCDHA1-202ENST00000394633 KRTAP20-1Q3LI63 56 aa5.04□□□□□ -1.6
PCDHA1-202ENST00000394633 KRTAP5-4Q6L8H1 288 aa5.01□□□□□ -1.61
PCDHA1-202ENST00000394633 KRTAP2-2Q9BYT5 123 aa5.01□□□□□ -1.61
PCDHA1-202ENST00000394633 PRM1P04553 51 aa4.99□□□□□ -1.61
PCDHA1-202ENST00000394633 KRTAP9-4Q9BYQ2 154 aa4.97□□□□□ -1.61
PCDHA1-202ENST00000394633 MT4P47944 62 aa4.89□□□□□ -1.63
PCDHA1-202ENST00000394633 KRTAP4-6Q9BYQ5 205 aa4.87□□□□□ -1.63
PCDHA1-202ENST00000394633 LCE4AQ5TA78 99 aa4.85□□□□□ -1.63
PCDHA1-202ENST00000394633 HMCN1Q96RW7 5635 aa4.84□□□□□ -1.64
PCDHA1-202ENST00000394633 KRTAP6-2Q3LI66 62 aa4.82□□□□□ -1.64
PCDHA1-202ENST00000394633 LCE1DQ5T752 114 aa4.78□□□□□ -1.64
PCDHA1-202ENST00000394633 MT3P25713 68 aa4.73□□□□□ -1.65
PCDHA1-202ENST00000394633 KRTAP20-2Q3LI61 65 aa4.71□□□□□ -1.66
PCDHA1-202ENST00000394633 OBSCNQ5VST9 7968 aa4.69□□□□□ -1.66
PCDHA1-202ENST00000394633 KRTAP5-2Q701N4 177 aa4.54□□□□□ -1.68
PCDHA1-202ENST00000394633 KRTAP5-3Q6L8H2 238 aa4.54□□□□□ -1.68
PCDHA1-202ENST00000394633 AHNAK2Q8IVF2 5795 aa4.22□□□□□ -1.73
PCDHA1-202ENST00000394633 KRTAP4-11Q9BYQ6 195 aa4.09□□□□□ -1.76
PCDHA1-202ENST00000394633 MUC5ACP98088 5654 aa4□□□□□ -1.77
PCDHA1-202ENST00000394633 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
PCDHA1-202ENST00000394633 KRTAP5-1Q6L8H4 278 aa3.97□□□□□ -1.77
PCDHA1-202ENST00000394633 KRTAP5-10Q6L8G5 202 aa3.96□□□□□ -1.78
PCDHA1-202ENST00000394633 KRTAP5-8O75690 187 aa3.94□□□□□ -1.78
PCDHA1-202ENST00000394633 LCE1BQ5T7P3 118 aa3.85□□□□□ -1.79
PCDHA1-202ENST00000394633 KRTAP4-2Q9BYR5 136 aa3.81□□□□□ -1.8
PCDHA1-202ENST00000394633 GPR98Q8WXG9 6306 aa3.79□□□□□ -1.8
PCDHA1-202ENST00000394633 KRTAP5-7Q6L8G8 165 aa3.75□□□□□ -1.81
PCDHA1-202ENST00000394633 LCE1CQ5T751 118 aa3.74□□□□□ -1.81
PCDHA1-202ENST00000394633 KRTAP4-12Q9BQ66 201 aa3.65□□□□□ -1.83
PCDHA1-202ENST00000394633 MUC5BQ9HC84 5762 aaPredicted RBP3.53□□□□□ -1.84
PCDHA1-202ENST00000394633 KRTAP9-9Q9BYP9 154 aa3.5□□□□□ -1.85
PCDHA1-202ENST00000394633 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
PCDHA1-202ENST00000394633 KRTAP21-2Q3LI59 83 aa3.46□□□□□ -1.86
PCDHA1-202ENST00000394633 KRTAP5-11Q6L8G4 156 aa3.31□□□□□ -1.88
PCDHA1-202ENST00000394633 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
PCDHA1-202ENST00000394633 KRTAP21-1Q3LI58 79 aa3.15□□□□□ -1.9
PCDHA1-202ENST00000394633 AHNAKQ09666 5890 aaKnown RBP3.11□□□□□ -1.91
PCDHA1-202ENST00000394633 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
PCDHA1-202ENST00000394633 LCE1FQ5T754 118 aa2.92□□□□□ -1.94
PCDHA1-202ENST00000394633 PHGR1C9JFL3 82 aa2.86□□□□□ -1.95
PCDHA1-202ENST00000394633 MUC16Q8WXI7 14507 aa1.82□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 93.5 ms