RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 KRTAP19-4Q3LI73 84 aa7.12□□□□□ -1.27
HDDC3-202ENST00000394272 KRTAP19-3Q7Z4W3 81 aa7.12□□□□□ -1.27
HDDC3-202ENST00000394272 LCE3CQ5T5A8 94 aa7.1□□□□□ -1.27
HDDC3-202ENST00000394272 H3BS24 57 aa7.09□□□□□ -1.27
HDDC3-202ENST00000394272 SPRR5A0A1B0GTR4 108 aa7.07□□□□□ -1.28
HDDC3-202ENST00000394272 MDN1Q9NU22 5596 aa7.06□□□□□ -1.28
HDDC3-202ENST00000394272 MT1GP13640 62 aa7.04□□□□□ -1.28
HDDC3-202ENST00000394272 KRTAP9-7A8MTY7 169 aa7.02□□□□□ -1.29
HDDC3-202ENST00000394272 LCE5AQ5TCM9 118 aa7.01□□□□□ -1.29
HDDC3-202ENST00000394272 KRTAP4-7Q9BYR0 210 aa7□□□□□ -1.29
HDDC3-202ENST00000394272 LCE1AQ5T7P2 110 aa6.98□□□□□ -1.29
HDDC3-202ENST00000394272 LUZP6Q538Z0 58 aa6.97□□□□□ -1.29
HDDC3-202ENST00000394272 MT1MQ8N339 61 aa6.96□□□□□ -1.29
HDDC3-202ENST00000394272 A0A0A0MQY5 61 aa6.95□□□□□ -1.3
HDDC3-202ENST00000394272 SPRR2EP22531 72 aa6.92□□□□□ -1.3
HDDC3-202ENST00000394272 SPRR2BP35325 72 aa6.92□□□□□ -1.3
HDDC3-202ENST00000394272 SPRR2AP35326 72 aa6.92□□□□□ -1.3
HDDC3-202ENST00000394272 KRTAP4-3Q9BYR4 195 aa6.83□□□□□ -1.32
HDDC3-202ENST00000394272 KRTAP9-6A8MVA2 160 aa6.75□□□□□ -1.33
HDDC3-202ENST00000394272 NEBP20929 6669 aa6.73□□□□□ -1.33
HDDC3-202ENST00000394272 DSTQ03001 7570 aaKnown RBP6.69□□□□□ -1.34
HDDC3-202ENST00000394272 SPRR2DP22532 72 aa6.66□□□□□ -1.34
HDDC3-202ENST00000394272 LOC100996750A0A140TA64 210 aa6.58□□□□□ -1.36
HDDC3-202ENST00000394272 LCE3BQ5TA77 95 aa6.41□□□□□ -1.38
HDDC3-202ENST00000394272 KRTAP5-5Q701N2 237 aaPredicted RBP6.32□□□□□ -1.4
HDDC3-202ENST00000394272 KRTAP2-3P0C7H8 128 aa6.26□□□□□ -1.41
HDDC3-202ENST00000394272 KRTAP2-4Q9BYR9 128 aa6.26□□□□□ -1.41
HDDC3-202ENST00000394272 KRTAP20-1Q3LI63 56 aa6.21□□□□□ -1.42
HDDC3-202ENST00000394272 KRTAP2-1Q9BYU5 128 aa6.19□□□□□ -1.42
HDDC3-202ENST00000394272 MT1AP04731 61 aa6.15□□□□□ -1.43
HDDC3-202ENST00000394272 KRTAP2-2Q9BYT5 123 aa6.13□□□□□ -1.43
HDDC3-202ENST00000394272 KRTAP6-1Q3LI64 71 aa6.1□□□□□ -1.43
HDDC3-202ENST00000394272 KRTAP5-4Q6L8H1 288 aa6.05□□□□□ -1.44
HDDC3-202ENST00000394272 SYNE1Q8NF91 8797 aaKnown RBP6.04□□□□□ -1.44
HDDC3-202ENST00000394272 LCE4AQ5TA78 99 aa5.92□□□□□ -1.46
HDDC3-202ENST00000394272 INE1O15225 51 aa5.88□□□□□ -1.47
HDDC3-202ENST00000394272 KRTAP9-4Q9BYQ2 154 aa5.85□□□□□ -1.47
HDDC3-202ENST00000394272 KRTAP12-4P60329 112 aa5.83□□□□□ -1.48
HDDC3-202ENST00000394272 MT4P47944 62 aa5.81□□□□□ -1.48
HDDC3-202ENST00000394272 KRTAP4-9Q9BYQ8 210 aa5.81□□□□□ -1.48
HDDC3-202ENST00000394272 KRTAP4-6Q9BYQ5 205 aa5.76□□□□□ -1.49
HDDC3-202ENST00000394272 LCE1DQ5T752 114 aa5.73□□□□□ -1.49
HDDC3-202ENST00000394272 HMCN1Q96RW7 5635 aa5.68□□□□□ -1.5
HDDC3-202ENST00000394272 KRTAP20-2Q3LI61 65 aa5.64□□□□□ -1.51
HDDC3-202ENST00000394272 KRTAP6-2Q3LI66 62 aa5.62□□□□□ -1.51
HDDC3-202ENST00000394272 MT3P25713 68 aa5.56□□□□□ -1.52
HDDC3-202ENST00000394272 KRTAP5-2Q701N4 177 aa5.49□□□□□ -1.53
HDDC3-202ENST00000394272 KRTAP5-3Q6L8H2 238 aa5.45□□□□□ -1.54
HDDC3-202ENST00000394272 LCE3DQ9BYE3 92 aa5.31□□□□□ -1.56
HDDC3-202ENST00000394272 OBSCNQ5VST9 7968 aa5.2□□□□□ -1.58
HDDC3-202ENST00000394272 LCE3EQ5T5B0 92 aa5.16□□□□□ -1.58
HDDC3-202ENST00000394272 AHNAK2Q8IVF2 5795 aa5.08□□□□□ -1.6
HDDC3-202ENST00000394272 KRTAP4-12Q9BQ66 201 aa4.95□□□□□ -1.62
HDDC3-202ENST00000394272 KRTAP4-11Q9BYQ6 195 aa4.91□□□□□ -1.62
HDDC3-202ENST00000394272 LCE1EQ5T753 118 aa4.86□□□□□ -1.63
HDDC3-202ENST00000394272 KRTAP5-10Q6L8G5 202 aa4.82□□□□□ -1.64
HDDC3-202ENST00000394272 KRTAP5-1Q6L8H4 278 aa4.75□□□□□ -1.65
HDDC3-202ENST00000394272 KRTAP5-8O75690 187 aa4.73□□□□□ -1.65
HDDC3-202ENST00000394272 GPR98Q8WXG9 6306 aa4.68□□□□□ -1.66
HDDC3-202ENST00000394272 KRTAP9-9Q9BYP9 154 aa4.62□□□□□ -1.67
HDDC3-202ENST00000394272 MUC5ACP98088 5654 aa4.61□□□□□ -1.67
HDDC3-202ENST00000394272 KRTAP5-7Q6L8G8 165 aa4.58□□□□□ -1.68
HDDC3-202ENST00000394272 KRTAP4-2Q9BYR5 136 aa4.55□□□□□ -1.68
HDDC3-202ENST00000394272 LCE1CQ5T751 118 aa4.53□□□□□ -1.68
HDDC3-202ENST00000394272 LCE1BQ5T7P3 118 aa4.53□□□□□ -1.68
HDDC3-202ENST00000394272 PRM1P04553 51 aa4.49□□□□□ -1.69
HDDC3-202ENST00000394272 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.25□□□□□ -1.73
HDDC3-202ENST00000394272 MUC5BQ9HC84 5762 aaPredicted RBP4.1□□□□□ -1.75
HDDC3-202ENST00000394272 KRTAP21-2Q3LI59 83 aa4.01□□□□□ -1.77
HDDC3-202ENST00000394272 KRTAP5-11Q6L8G4 156 aa4.01□□□□□ -1.77
HDDC3-202ENST00000394272 AHNAKQ09666 5890 aaKnown RBP3.88□□□□□ -1.79
HDDC3-202ENST00000394272 LCE1FQ5T754 118 aa3.67□□□□□ -1.82
HDDC3-202ENST00000394272 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
HDDC3-202ENST00000394272 PHGR1C9JFL3 82 aa3.44□□□□□ -1.86
HDDC3-202ENST00000394272 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
HDDC3-202ENST00000394272 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
HDDC3-202ENST00000394272 MUC16Q8WXI7 14507 aa2.24□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 754.7 ms