RNA–Protein interactions for RNA: ENST00000392597.5

PTPN11-202, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

TSL 1 (best) BASIC

Gene PTPN11, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-202ENST00000392597 KRTAP19-4Q3LI73 84 aa7.21□□□□□ -1.26
PTPN11-202ENST00000392597 MT1EP04732 61 aa7.18□□□□□ -1.26
PTPN11-202ENST00000392597 KRTAP5-9P26371 169 aa7.15□□□□□ -1.27
PTPN11-202ENST00000392597 MT1LQ93083 61 aa7.09□□□□□ -1.27
PTPN11-202ENST00000392597 MUC12Q9UKN1 5478 aa7.08□□□□□ -1.28
PTPN11-202ENST00000392597 SPRR2FQ96RM1 72 aa7.05□□□□□ -1.28
PTPN11-202ENST00000392597 MDN1Q9NU22 5596 aa6.95□□□□□ -1.3
PTPN11-202ENST00000392597 KRTAP4-7Q9BYR0 210 aa6.88□□□□□ -1.31
PTPN11-202ENST00000392597 KRTAP9-6A8MVA2 160 aa6.83□□□□□ -1.32
PTPN11-202ENST00000392597 KRTAP19-3Q7Z4W3 81 aa6.83□□□□□ -1.32
PTPN11-202ENST00000392597 NEBP20929 6669 aa6.83□□□□□ -1.32
PTPN11-202ENST00000392597 MT1GP13640 62 aa6.81□□□□□ -1.32
PTPN11-202ENST00000392597 LCE1AQ5T7P2 110 aa6.8□□□□□ -1.32
PTPN11-202ENST00000392597 SPRR2EP22531 72 aa6.79□□□□□ -1.32
PTPN11-202ENST00000392597 SPRR2BP35325 72 aa6.79□□□□□ -1.32
PTPN11-202ENST00000392597 SPRR2AP35326 72 aa6.79□□□□□ -1.32
PTPN11-202ENST00000392597 A0A0A0MQY5 61 aa6.79□□□□□ -1.32
PTPN11-202ENST00000392597 MT1MQ8N339 61 aa6.73□□□□□ -1.33
PTPN11-202ENST00000392597 LCE5AQ5TCM9 118 aa6.68□□□□□ -1.34
PTPN11-202ENST00000392597 KRTAP4-3Q9BYR4 195 aa6.6□□□□□ -1.35
PTPN11-202ENST00000392597 SPRR2DP22532 72 aa6.56□□□□□ -1.36
PTPN11-202ENST00000392597 KRTAP2-3P0C7H8 128 aa6.49□□□□□ -1.37
PTPN11-202ENST00000392597 KRTAP2-4Q9BYR9 128 aa6.49□□□□□ -1.37
PTPN11-202ENST00000392597 KRTAP2-1Q9BYU5 128 aa6.49□□□□□ -1.37
PTPN11-202ENST00000392597 LOC100996750A0A140TA64 210 aa6.45□□□□□ -1.38
PTPN11-202ENST00000392597 KRTAP20-1Q3LI63 56 aa6.39□□□□□ -1.39
PTPN11-202ENST00000392597 DSTQ03001 7570 aaKnown RBP6.39□□□□□ -1.39
PTPN11-202ENST00000392597 LCE3BQ5TA77 95 aa6.34□□□□□ -1.39
PTPN11-202ENST00000392597 INE1O15225 51 aa6.3□□□□□ -1.4
PTPN11-202ENST00000392597 KRTAP2-2Q9BYT5 123 aa6.23□□□□□ -1.41
PTPN11-202ENST00000392597 KRTAP5-5Q701N2 237 aaPredicted RBP6.05□□□□□ -1.44
PTPN11-202ENST00000392597 MT1AP04731 61 aa6.02□□□□□ -1.44
PTPN11-202ENST00000392597 KRTAP6-1Q3LI64 71 aa5.96□□□□□ -1.46
PTPN11-202ENST00000392597 KRTAP5-4Q6L8H1 288 aa5.86□□□□□ -1.47
PTPN11-202ENST00000392597 LCE4AQ5TA78 99 aa5.85□□□□□ -1.47
PTPN11-202ENST00000392597 KRTAP4-9Q9BYQ8 210 aa5.73□□□□□ -1.49
PTPN11-202ENST00000392597 SYNE1Q8NF91 8797 aaKnown RBP5.71□□□□□ -1.5
PTPN11-202ENST00000392597 MT4P47944 62 aa5.69□□□□□ -1.5
PTPN11-202ENST00000392597 LCE1DQ5T752 114 aa5.68□□□□□ -1.5
PTPN11-202ENST00000392597 KRTAP9-4Q9BYQ2 154 aa5.68□□□□□ -1.5
PTPN11-202ENST00000392597 HMCN1Q96RW7 5635 aa5.63□□□□□ -1.51
PTPN11-202ENST00000392597 KRTAP4-6Q9BYQ5 205 aa5.6□□□□□ -1.51
PTPN11-202ENST00000392597 KRTAP12-4P60329 112 aa5.6□□□□□ -1.51
PTPN11-202ENST00000392597 KRTAP20-2Q3LI61 65 aa5.48□□□□□ -1.53
PTPN11-202ENST00000392597 LCE3DQ9BYE3 92 aa5.47□□□□□ -1.53
PTPN11-202ENST00000392597 MT3P25713 68 aa5.44□□□□□ -1.54
PTPN11-202ENST00000392597 KRTAP6-2Q3LI66 62 aa5.43□□□□□ -1.54
PTPN11-202ENST00000392597 LCE3EQ5T5B0 92 aa5.37□□□□□ -1.55
PTPN11-202ENST00000392597 KRTAP5-3Q6L8H2 238 aa5.3□□□□□ -1.56
PTPN11-202ENST00000392597 KRTAP5-2Q701N4 177 aa5.24□□□□□ -1.57
PTPN11-202ENST00000392597 AHNAK2Q8IVF2 5795 aa5.15□□□□□ -1.59
PTPN11-202ENST00000392597 GPR98Q8WXG9 6306 aa5.01□□□□□ -1.61
PTPN11-202ENST00000392597 KRTAP5-10Q6L8G5 202 aa5□□□□□ -1.61
PTPN11-202ENST00000392597 OBSCNQ5VST9 7968 aa4.96□□□□□ -1.62
PTPN11-202ENST00000392597 KRTAP4-11Q9BYQ6 195 aa4.87□□□□□ -1.63
PTPN11-202ENST00000392597 PRM1P04553 51 aa4.83□□□□□ -1.64
PTPN11-202ENST00000392597 KRTAP5-7Q6L8G8 165 aa4.71□□□□□ -1.66
PTPN11-202ENST00000392597 KRTAP5-8O75690 187 aa4.69□□□□□ -1.66
PTPN11-202ENST00000392597 LCE1EQ5T753 118 aa4.66□□□□□ -1.66
PTPN11-202ENST00000392597 KRTAP5-1Q6L8H4 278 aa4.59□□□□□ -1.67
PTPN11-202ENST00000392597 MUC5ACP98088 5654 aa4.46□□□□□ -1.7
PTPN11-202ENST00000392597 LCE1CQ5T751 118 aa4.35□□□□□ -1.71
PTPN11-202ENST00000392597 LCE1BQ5T7P3 118 aa4.35□□□□□ -1.71
PTPN11-202ENST00000392597 KRTAP9-9Q9BYP9 154 aa4.33□□□□□ -1.72
PTPN11-202ENST00000392597 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
PTPN11-202ENST00000392597 MUC5BQ9HC84 5762 aaPredicted RBP4.21□□□□□ -1.74
PTPN11-202ENST00000392597 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.11□□□□□ -1.75
PTPN11-202ENST00000392597 AHNAKQ09666 5890 aaKnown RBP4.02□□□□□ -1.77
PTPN11-202ENST00000392597 KRTAP4-12Q9BQ66 201 aa4.01□□□□□ -1.77
PTPN11-202ENST00000392597 KRTAP21-2Q3LI59 83 aa3.9□□□□□ -1.78
PTPN11-202ENST00000392597 KRTAP5-11Q6L8G4 156 aa3.83□□□□□ -1.8
PTPN11-202ENST00000392597 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
PTPN11-202ENST00000392597 KRTAP4-4Q9BYR3 166 aa3.41□□□□□ -1.86
PTPN11-202ENST00000392597 PHGR1C9JFL3 82 aa3.28□□□□□ -1.88
PTPN11-202ENST00000392597 KRTAP21-1Q3LI58 79 aa3.03□□□□□ -1.92
PTPN11-202ENST00000392597 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
PTPN11-202ENST00000392597 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms