RNA–Protein interactions for RNA: ENST00000380180.7

PDLIM5-205, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 2,020 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-205ENST00000380180 KRTAP9-7A8MTY7 169 aa6.89□□□□□ -1.31
PDLIM5-205ENST00000380180 SPRR2FQ96RM1 72 aa6.84□□□□□ -1.31
PDLIM5-205ENST00000380180 MUC12Q9UKN1 5478 aa6.83□□□□□ -1.32
PDLIM5-205ENST00000380180 SYNE2Q8WXH0 6885 aaKnown RBP6.82□□□□□ -1.32
PDLIM5-205ENST00000380180 KRTAP19-3Q7Z4W3 81 aa6.8□□□□□ -1.32
PDLIM5-205ENST00000380180 KRTAP9-6A8MVA2 160 aa6.76□□□□□ -1.33
PDLIM5-205ENST00000380180 H3BS24 57 aa6.76□□□□□ -1.33
PDLIM5-205ENST00000380180 LOC100996750A0A140TA64 210 aa6.75□□□□□ -1.33
PDLIM5-205ENST00000380180 MT1GP13640 62 aa6.75□□□□□ -1.33
PDLIM5-205ENST00000380180 KRTAP4-6Q9BYQ5 205 aa6.75□□□□□ -1.33
PDLIM5-205ENST00000380180 KRTAP6-3Q3LI67 103 aa6.72□□□□□ -1.33
PDLIM5-205ENST00000380180 MT1MQ8N339 61 aa6.7□□□□□ -1.34
PDLIM5-205ENST00000380180 LCE5AQ5TCM9 118 aa6.66□□□□□ -1.34
PDLIM5-205ENST00000380180 KRTAP4-3Q9BYR4 195 aa6.66□□□□□ -1.34
PDLIM5-205ENST00000380180 KRTAP5-9P26371 169 aa6.64□□□□□ -1.35
PDLIM5-205ENST00000380180 LCE1AQ5T7P2 110 aa6.5□□□□□ -1.37
PDLIM5-205ENST00000380180 MDN1Q9NU22 5596 aa6.44□□□□□ -1.38
PDLIM5-205ENST00000380180 SPRR2EP22531 72 aa6.42□□□□□ -1.38
PDLIM5-205ENST00000380180 SPRR2BP35325 72 aa6.42□□□□□ -1.38
PDLIM5-205ENST00000380180 SPRR2AP35326 72 aa6.42□□□□□ -1.38
PDLIM5-205ENST00000380180 NEBP20929 6669 aa6.35□□□□□ -1.39
PDLIM5-205ENST00000380180 A0A0A0MQY5 61 aa6.35□□□□□ -1.39
PDLIM5-205ENST00000380180 DSTQ03001 7570 aaKnown RBP6.34□□□□□ -1.4
PDLIM5-205ENST00000380180 KRTAP2-3P0C7H8 128 aa6.29□□□□□ -1.4
PDLIM5-205ENST00000380180 KRTAP2-4Q9BYR9 128 aa6.29□□□□□ -1.4
PDLIM5-205ENST00000380180 KRTAP2-1Q9BYU5 128 aa6.29□□□□□ -1.4
PDLIM5-205ENST00000380180 SPRR2DP22532 72 aa6.16□□□□□ -1.42
PDLIM5-205ENST00000380180 KRTAP20-1Q3LI63 56 aa6.07□□□□□ -1.44
PDLIM5-205ENST00000380180 KRTAP5-5Q701N2 237 aaPredicted RBP6.01□□□□□ -1.45
PDLIM5-205ENST00000380180 KRTAP4-12Q9BQ66 201 aa6.01□□□□□ -1.45
PDLIM5-205ENST00000380180 KRTAP6-1Q3LI64 71 aa5.94□□□□□ -1.46
PDLIM5-205ENST00000380180 MT1AP04731 61 aa5.94□□□□□ -1.46
PDLIM5-205ENST00000380180 LCE3BQ5TA77 95 aa5.94□□□□□ -1.46
PDLIM5-205ENST00000380180 INE1O15225 51 aa5.9□□□□□ -1.47
PDLIM5-205ENST00000380180 KRTAP2-2Q9BYT5 123 aa5.83□□□□□ -1.48
PDLIM5-205ENST00000380180 KRTAP9-9Q9BYP9 154 aa5.74□□□□□ -1.49
PDLIM5-205ENST00000380180 KRTAP9-4Q9BYQ2 154 aa5.74□□□□□ -1.49
PDLIM5-205ENST00000380180 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
PDLIM5-205ENST00000380180 KRTAP5-4Q6L8H1 288 aa5.61□□□□□ -1.51
PDLIM5-205ENST00000380180 KRTAP4-9Q9BYQ8 210 aa5.58□□□□□ -1.52
PDLIM5-205ENST00000380180 LCE1DQ5T752 114 aa5.56□□□□□ -1.52
PDLIM5-205ENST00000380180 KRTAP12-4P60329 112 aa5.51□□□□□ -1.53
PDLIM5-205ENST00000380180 LCE4AQ5TA78 99 aa5.5□□□□□ -1.53
PDLIM5-205ENST00000380180 KRTAP6-2Q3LI66 62 aa5.43□□□□□ -1.54
PDLIM5-205ENST00000380180 KRTAP5-3Q6L8H2 238 aa5.4□□□□□ -1.55
PDLIM5-205ENST00000380180 MT4P47944 62 aa5.39□□□□□ -1.55
PDLIM5-205ENST00000380180 MT3P25713 68 aa5.37□□□□□ -1.55
PDLIM5-205ENST00000380180 LCE3DQ9BYE3 92 aa5.35□□□□□ -1.55
PDLIM5-205ENST00000380180 KRTAP20-2Q3LI61 65 aa5.25□□□□□ -1.57
PDLIM5-205ENST00000380180 LCE3EQ5T5B0 92 aa5.23□□□□□ -1.57
PDLIM5-205ENST00000380180 KRTAP4-11Q9BYQ6 195 aa5.2□□□□□ -1.58
PDLIM5-205ENST00000380180 KRTAP4-2Q9BYR5 136 aa5.18□□□□□ -1.58
PDLIM5-205ENST00000380180 HMCN1Q96RW7 5635 aa5.16□□□□□ -1.58
PDLIM5-205ENST00000380180 KRTAP5-2Q701N4 177 aa5.12□□□□□ -1.59
PDLIM5-205ENST00000380180 OBSCNQ5VST9 7968 aa5.01□□□□□ -1.61
PDLIM5-205ENST00000380180 GPR98Q8WXG9 6306 aa4.86□□□□□ -1.63
PDLIM5-205ENST00000380180 AHNAK2Q8IVF2 5795 aa4.81□□□□□ -1.64
PDLIM5-205ENST00000380180 KRTAP5-10Q6L8G5 202 aa4.73□□□□□ -1.65
PDLIM5-205ENST00000380180 PRM1P04553 51 aa4.69□□□□□ -1.66
PDLIM5-205ENST00000380180 LCE1EQ5T753 118 aa4.58□□□□□ -1.68
PDLIM5-205ENST00000380180 KRTAP5-7Q6L8G8 165 aa4.49□□□□□ -1.69
PDLIM5-205ENST00000380180 KRTAP5-1Q6L8H4 278 aa4.43□□□□□ -1.7
PDLIM5-205ENST00000380180 LCE1BQ5T7P3 118 aa4.38□□□□□ -1.71
PDLIM5-205ENST00000380180 MUC5ACP98088 5654 aa4.35□□□□□ -1.71
PDLIM5-205ENST00000380180 KRTAP5-8O75690 187 aa4.35□□□□□ -1.71
PDLIM5-205ENST00000380180 LCE1CQ5T751 118 aa4.29□□□□□ -1.72
PDLIM5-205ENST00000380180 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.02□□□□□ -1.77
PDLIM5-205ENST00000380180 MUC5BQ9HC84 5762 aaPredicted RBP3.91□□□□□ -1.78
PDLIM5-205ENST00000380180 KRTAP21-2Q3LI59 83 aa3.88□□□□□ -1.79
PDLIM5-205ENST00000380180 AHNAKQ09666 5890 aaKnown RBP3.83□□□□□ -1.8
PDLIM5-205ENST00000380180 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
PDLIM5-205ENST00000380180 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
PDLIM5-205ENST00000380180 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
PDLIM5-205ENST00000380180 PHGR1C9JFL3 82 aa3.24□□□□□ -1.89
PDLIM5-205ENST00000380180 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
PDLIM5-205ENST00000380180 KRTAP21-1Q3LI58 79 aa2.88□□□□□ -1.95
PDLIM5-205ENST00000380180 MUC16Q8WXI7 14507 aa2.09□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 143.5 ms