RNA–Protein interactions for RNA: ENST00000379996.7

CDKL5-202, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,449 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-202ENST00000379996 USH2AO75445 5202 aa3.21□□□□□ -1.89
CDKL5-202ENST00000379996 SPRR5A0A1B0GTR4 108 aa3.21□□□□□ -1.9
CDKL5-202ENST00000379996 KRTAP10-5P60370 271 aa3.18□□□□□ -1.9
CDKL5-202ENST00000379996 SSPOA2VEC9 5147 aa3.17□□□□□ -1.9
CDKL5-202ENST00000379996 MT1XP80297 61 aa3.16□□□□□ -1.9
CDKL5-202ENST00000379996 PRO2289Q9P1D8 64 aa3.15□□□□□ -1.91
CDKL5-202ENST00000379996 CRCT1Q9UGL9 99 aa3.14□□□□□ -1.91
CDKL5-202ENST00000379996 TNP1P09430 55 aa3.13□□□□□ -1.91
CDKL5-202ENST00000379996 LCE3AQ5TA76 89 aa3.07□□□□□ -1.92
CDKL5-202ENST00000379996 KRTAP8-1Q8IUC2 63 aa3.05□□□□□ -1.92
CDKL5-202ENST00000379996 FCGBPQ9Y6R7 5405 aaPredicted RBP3.01□□□□□ -1.93
CDKL5-202ENST00000379996 KRTAP5-3Q6L8H2 238 aa2.99□□□□□ -1.93
CDKL5-202ENST00000379996 KRTAP10-7P60409 375 aaPredicted RBP2.98□□□□□ -1.93
CDKL5-202ENST00000379996 FSIP2Q5CZC0 6907 aa2.93□□□□□ -1.94
CDKL5-202ENST00000379996 KRTAP5-9P26371 169 aa2.89□□□□□ -1.95
CDKL5-202ENST00000379996 KRTAP12-3P60328 96 aa2.89□□□□□ -1.95
CDKL5-202ENST00000379996 KRTAP6-3Q3LI67 103 aa2.87□□□□□ -1.95
CDKL5-202ENST00000379996 LCE3DQ9BYE3 92 aa2.87□□□□□ -1.95
CDKL5-202ENST00000379996 MACF1Q9UPN3 7388 aaKnown RBP2.85□□□□□ -1.95
CDKL5-202ENST00000379996 KRTAP19-7Q3SYF9 63 aa2.82□□□□□ -1.96
CDKL5-202ENST00000379996 KRTAP19-5Q3LI72 72 aa2.81□□□□□ -1.96
CDKL5-202ENST00000379996 KMT2DO14686 5537 aa2.8□□□□□ -1.96
CDKL5-202ENST00000379996 MT1EP04732 61 aa2.79□□□□□ -1.96
CDKL5-202ENST00000379996 KRTAP9-6A8MVA2 160 aa2.75□□□□□ -1.97
CDKL5-202ENST00000379996 SPRR2FQ96RM1 72 aa2.74□□□□□ -1.97
CDKL5-202ENST00000379996 SYNE2Q8WXH0 6885 aaKnown RBP2.73□□□□□ -1.97
CDKL5-202ENST00000379996 LCE1EQ5T753 118 aa2.71□□□□□ -1.97
CDKL5-202ENST00000379996 MT1LQ93083 61 aa2.71□□□□□ -1.98
CDKL5-202ENST00000379996 KRTAP19-3Q7Z4W3 81 aa2.7□□□□□ -1.98
CDKL5-202ENST00000379996 OBSCNQ5VST9 7968 aa2.68□□□□□ -1.98
CDKL5-202ENST00000379996 MT1GP13640 62 aa2.68□□□□□ -1.98
CDKL5-202ENST00000379996 INE1O15225 51 aa2.67□□□□□ -1.98
CDKL5-202ENST00000379996 KRTAP2-3P0C7H8 128 aa2.66□□□□□ -1.98
CDKL5-202ENST00000379996 KRTAP2-4Q9BYR9 128 aa2.66□□□□□ -1.98
CDKL5-202ENST00000379996 KRTAP2-1Q9BYU5 128 aa2.66□□□□□ -1.98
CDKL5-202ENST00000379996 SPRR2EP22531 72 aa2.65□□□□□ -1.99
CDKL5-202ENST00000379996 SPRR2BP35325 72 aa2.65□□□□□ -1.99
CDKL5-202ENST00000379996 SPRR2AP35326 72 aa2.65□□□□□ -1.99
CDKL5-202ENST00000379996 NEBP20929 6669 aa2.65□□□□□ -1.99
CDKL5-202ENST00000379996 MT1MQ8N339 61 aa2.62□□□□□ -1.99
CDKL5-202ENST00000379996 MUC12Q9UKN1 5478 aa2.62□□□□□ -1.99
CDKL5-202ENST00000379996 GPR98Q8WXG9 6306 aa2.61□□□□□ -1.99
CDKL5-202ENST00000379996 KRTAP20-1Q3LI63 56 aa2.59□□□□□ -1.99
CDKL5-202ENST00000379996 MDN1Q9NU22 5596 aa2.57□□□□□ -2
CDKL5-202ENST00000379996 SPRR2DP22532 72 aa2.57□□□□□ -2
CDKL5-202ENST00000379996 KRTAP5-11Q6L8G4 156 aa2.55□□□□□ -2
CDKL5-202ENST00000379996 KRTAP4-3Q9BYR4 195 aa2.47□□□□□ -2.01
CDKL5-202ENST00000379996 KRTAP5-5Q701N2 237 aaPredicted RBP2.45□□□□□ -2.02
CDKL5-202ENST00000379996 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.02
CDKL5-202ENST00000379996 MT1AP04731 61 aa2.33□□□□□ -2.04
CDKL5-202ENST00000379996 DSTQ03001 7570 aaKnown RBP2.26□□□□□ -2.05
CDKL5-202ENST00000379996 KRTAP6-1Q3LI64 71 aa2.25□□□□□ -2.05
CDKL5-202ENST00000379996 KRTAP12-4P60329 112 aa2.22□□□□□ -2.05
CDKL5-202ENST00000379996 KRTAP20-2Q3LI61 65 aa2.19□□□□□ -2.06
CDKL5-202ENST00000379996 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
CDKL5-202ENST00000379996 MT4P47944 62 aa2.17□□□□□ -2.06
CDKL5-202ENST00000379996 KRTAP5-1Q6L8H4 278 aa2.14□□□□□ -2.07
CDKL5-202ENST00000379996 HMCN1Q96RW7 5635 aa2.14□□□□□ -2.07
CDKL5-202ENST00000379996 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
CDKL5-202ENST00000379996 AHNAK2Q8IVF2 5795 aa2.11□□□□□ -2.07
CDKL5-202ENST00000379996 KRTAP5-7Q6L8G8 165 aa2.1□□□□□ -2.07
CDKL5-202ENST00000379996 SYNE1Q8NF91 8797 aaKnown RBP2.09□□□□□ -2.07
CDKL5-202ENST00000379996 KRTAP6-2Q3LI66 62 aa2.08□□□□□ -2.08
CDKL5-202ENST00000379996 KRTAP5-10Q6L8G5 202 aa2.05□□□□□ -2.08
CDKL5-202ENST00000379996 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
CDKL5-202ENST00000379996 MUC5BQ9HC84 5762 aaPredicted RBP1.99□□□□□ -2.09
CDKL5-202ENST00000379996 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
CDKL5-202ENST00000379996 PRM1P04553 51 aa1.97□□□□□ -2.09
CDKL5-202ENST00000379996 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
CDKL5-202ENST00000379996 KRTAP5-8O75690 187 aa1.87□□□□□ -2.11
CDKL5-202ENST00000379996 MUC5ACP98088 5654 aa1.8□□□□□ -2.12
CDKL5-202ENST00000379996 LCE1CQ5T751 118 aa1.78□□□□□ -2.13
CDKL5-202ENST00000379996 LCE1BQ5T7P3 118 aa1.78□□□□□ -2.13
CDKL5-202ENST00000379996 KRTAP21-2Q3LI59 83 aa1.52□□□□□ -2.17
CDKL5-202ENST00000379996 PHGR1C9JFL3 82 aa1.35□□□□□ -2.19
CDKL5-202ENST00000379996 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.2
CDKL5-202ENST00000379996 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 17.8 ms