RNA–Protein interactions for RNA: ENST00000379989.6

CDKL5-201, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-201ENST00000379989 KRTAP10-5P60370 271 aa2.8□□□□□ -1.96
CDKL5-201ENST00000379989 MT1XP80297 61 aa2.8□□□□□ -1.96
CDKL5-201ENST00000379989 SSPOA2VEC9 5147 aa2.75□□□□□ -1.97
CDKL5-201ENST00000379989 KRTAP2-3P0C7H8 128 aa2.73□□□□□ -1.97
CDKL5-201ENST00000379989 KRTAP2-4Q9BYR9 128 aa2.73□□□□□ -1.97
CDKL5-201ENST00000379989 KRTAP2-1Q9BYU5 128 aa2.73□□□□□ -1.97
CDKL5-201ENST00000379989 USH2AO75445 5202 aa2.73□□□□□ -1.97
CDKL5-201ENST00000379989 KRTAP9-6A8MVA2 160 aa2.69□□□□□ -1.98
CDKL5-201ENST00000379989 LCE3CQ5T5A8 94 aa2.68□□□□□ -1.98
CDKL5-201ENST00000379989 KRTAP19-6Q3LI70 58 aa2.65□□□□□ -1.99
CDKL5-201ENST00000379989 KRTAP5-3Q6L8H2 238 aa2.65□□□□□ -1.99
CDKL5-201ENST00000379989 KRTAP10-7P60409 375 aaPredicted RBP2.64□□□□□ -1.99
CDKL5-201ENST00000379989 CRCT1Q9UGL9 99 aa2.58□□□□□ -2
CDKL5-201ENST00000379989 FCGBPQ9Y6R7 5405 aaPredicted RBP2.56□□□□□ -2
CDKL5-201ENST00000379989 KRTAP19-5Q3LI72 72 aa2.55□□□□□ -2
CDKL5-201ENST00000379989 KRTAP12-4P60329 112 aa2.52□□□□□ -2.01
CDKL5-201ENST00000379989 KRTAP19-7Q3SYF9 63 aa2.49□□□□□ -2.01
CDKL5-201ENST00000379989 KRTAP2-2Q9BYT5 123 aa2.48□□□□□ -2.01
CDKL5-201ENST00000379989 MT1EP04732 61 aa2.47□□□□□ -2.01
CDKL5-201ENST00000379989 FSIP2Q5CZC0 6907 aa2.45□□□□□ -2.02
CDKL5-201ENST00000379989 KRTAP6-3Q3LI67 103 aa2.44□□□□□ -2.02
CDKL5-201ENST00000379989 MT1LQ93083 61 aa2.44□□□□□ -2.02
CDKL5-201ENST00000379989 KMT2DO14686 5537 aa2.43□□□□□ -2.02
CDKL5-201ENST00000379989 MT1GP13640 62 aa2.42□□□□□ -2.02
CDKL5-201ENST00000379989 MACF1Q9UPN3 7388 aaKnown RBP2.41□□□□□ -2.02
CDKL5-201ENST00000379989 LCE1AQ5T7P2 110 aa2.41□□□□□ -2.02
CDKL5-201ENST00000379989 KRTAP5-9P26371 169 aa2.39□□□□□ -2.03
CDKL5-201ENST00000379989 KRTAP19-3Q7Z4W3 81 aa2.37□□□□□ -2.03
CDKL5-201ENST00000379989 SYNE2Q8WXH0 6885 aaKnown RBP2.33□□□□□ -2.04
CDKL5-201ENST00000379989 MT1MQ8N339 61 aa2.31□□□□□ -2.04
CDKL5-201ENST00000379989 PRM1P04553 51 aa2.3□□□□□ -2.04
CDKL5-201ENST00000379989 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
CDKL5-201ENST00000379989 MUC12Q9UKN1 5478 aa2.28□□□□□ -2.04
CDKL5-201ENST00000379989 KRTAP5-5Q701N2 237 aaPredicted RBP2.25□□□□□ -2.05
CDKL5-201ENST00000379989 SPRR2FQ96RM1 72 aa2.25□□□□□ -2.05
CDKL5-201ENST00000379989 NEBP20929 6669 aa2.25□□□□□ -2.05
CDKL5-201ENST00000379989 SYNE1Q8NF91 8797 aaKnown RBP2.22□□□□□ -2.05
CDKL5-201ENST00000379989 MDN1Q9NU22 5596 aa2.22□□□□□ -2.05
CDKL5-201ENST00000379989 KRTAP4-3Q9BYR4 195 aa2.18□□□□□ -2.06
CDKL5-201ENST00000379989 LCE3EQ5T5B0 92 aa2.15□□□□□ -2.07
CDKL5-201ENST00000379989 MT1AP04731 61 aa2.14□□□□□ -2.07
CDKL5-201ENST00000379989 LCE3DQ9BYE3 92 aa2.14□□□□□ -2.07
CDKL5-201ENST00000379989 SPRR2EP22531 72 aa2.12□□□□□ -2.07
CDKL5-201ENST00000379989 SPRR2BP35325 72 aa2.12□□□□□ -2.07
CDKL5-201ENST00000379989 SPRR2AP35326 72 aa2.12□□□□□ -2.07
CDKL5-201ENST00000379989 KRTAP6-2Q3LI66 62 aa2.08□□□□□ -2.08
CDKL5-201ENST00000379989 SPRR2DP22532 72 aa2.06□□□□□ -2.08
CDKL5-201ENST00000379989 KRTAP5-11Q6L8G4 156 aa2.05□□□□□ -2.08
CDKL5-201ENST00000379989 OBSCNQ5VST9 7968 aa2.04□□□□□ -2.08
CDKL5-201ENST00000379989 MT3P25713 68 aa2.03□□□□□ -2.08
CDKL5-201ENST00000379989 KRTAP20-1Q3LI63 56 aa2.03□□□□□ -2.09
CDKL5-201ENST00000379989 LCE1FQ5T754 118 aa2.01□□□□□ -2.09
CDKL5-201ENST00000379989 KRTAP6-1Q3LI64 71 aa1.99□□□□□ -2.09
CDKL5-201ENST00000379989 KRTAP5-4Q6L8H1 288 aa1.99□□□□□ -2.09
CDKL5-201ENST00000379989 DSTQ03001 7570 aaKnown RBP1.95□□□□□ -2.1
CDKL5-201ENST00000379989 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.92□□□□□ -2.1
CDKL5-201ENST00000379989 HMCN1Q96RW7 5635 aa1.83□□□□□ -2.12
CDKL5-201ENST00000379989 KRTAP5-2Q701N4 177 aa1.82□□□□□ -2.12
CDKL5-201ENST00000379989 KRTAP5-1Q6L8H4 278 aa1.79□□□□□ -2.12
CDKL5-201ENST00000379989 KRTAP20-2Q3LI61 65 aa1.78□□□□□ -2.12
CDKL5-201ENST00000379989 AHNAK2Q8IVF2 5795 aa1.74□□□□□ -2.13
CDKL5-201ENST00000379989 KRTAP5-10Q6L8G5 202 aa1.73□□□□□ -2.13
CDKL5-201ENST00000379989 MUC19Q7Z5P9 8384 aa1.7□□□□□ -2.14
CDKL5-201ENST00000379989 MT4P47944 62 aa1.69□□□□□ -2.14
CDKL5-201ENST00000379989 KRTAP4-4Q9BYR3 166 aa1.68□□□□□ -2.14
CDKL5-201ENST00000379989 KRTAP5-7Q6L8G8 165 aa1.64□□□□□ -2.15
CDKL5-201ENST00000379989 GPR98Q8WXG9 6306 aa1.58□□□□□ -2.16
CDKL5-201ENST00000379989 KRTAP5-8O75690 187 aa1.57□□□□□ -2.16
CDKL5-201ENST00000379989 LCE1CQ5T751 118 aa1.57□□□□□ -2.16
CDKL5-201ENST00000379989 LCE1BQ5T7P3 118 aa1.57□□□□□ -2.16
CDKL5-201ENST00000379989 MUC5ACP98088 5654 aa1.54□□□□□ -2.16
CDKL5-201ENST00000379989 KRTAP21-1Q3LI58 79 aa1.5□□□□□ -2.17
CDKL5-201ENST00000379989 MUC5BQ9HC84 5762 aaPredicted RBP1.43□□□□□ -2.18
CDKL5-201ENST00000379989 AHNAKQ09666 5890 aaKnown RBP1.39□□□□□ -2.19
CDKL5-201ENST00000379989 KRTAP21-2Q3LI59 83 aa1.34□□□□□ -2.2
CDKL5-201ENST00000379989 PHGR1C9JFL3 82 aa1.14□□□□□ -2.23
CDKL5-201ENST00000379989 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 84.6 ms