RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 KRTAP10-12P60413 245 aa3.36□□□□□ -1.87
UBR4-201ENST00000375218 SPRR2GQ9BYE4 73 aa3.34□□□□□ -1.87
UBR4-201ENST00000375218 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
UBR4-201ENST00000375218 KRTAP10-7P60409 375 aaPredicted RBP3.31□□□□□ -1.88
UBR4-201ENST00000375218 MUC12Q9UKN1 5478 aa3.3□□□□□ -1.88
UBR4-201ENST00000375218 KRTAP10-5P60370 271 aa3.29□□□□□ -1.88
UBR4-201ENST00000375218 MT1XP80297 61 aa3.27□□□□□ -1.89
UBR4-201ENST00000375218 KRTAP19-8Q3LI54 63 aa3.25□□□□□ -1.89
UBR4-201ENST00000375218 MDN1Q9NU22 5596 aa3.23□□□□□ -1.89
UBR4-201ENST00000375218 MACF1Q9UPN3 7388 aaKnown RBP3.22□□□□□ -1.89
UBR4-201ENST00000375218 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
UBR4-201ENST00000375218 KRTAP4-8Q9BYQ9 185 aa3.19□□□□□ -1.9
UBR4-201ENST00000375218 SYNE2Q8WXH0 6885 aaKnown RBP3.16□□□□□ -1.9
UBR4-201ENST00000375218 KRTAP12-3P60328 96 aa3.12□□□□□ -1.91
UBR4-201ENST00000375218 KRTAP4-8A0A0G2JLE6 195 aa3.11□□□□□ -1.91
UBR4-201ENST00000375218 DSTQ03001 7570 aaKnown RBP3.04□□□□□ -1.92
UBR4-201ENST00000375218 LCE3AQ5TA76 89 aa3.03□□□□□ -1.92
UBR4-201ENST00000375218 KRTAP20-1Q3LI63 56 aa3□□□□□ -1.93
UBR4-201ENST00000375218 KRTAP19-7Q3SYF9 63 aa2.99□□□□□ -1.93
UBR4-201ENST00000375218 KRTAP19-6Q3LI70 58 aa2.97□□□□□ -1.93
UBR4-201ENST00000375218 KRTAP4-12Q9BQ66 201 aa2.95□□□□□ -1.94
UBR4-201ENST00000375218 LCE3BQ5TA77 95 aa2.94□□□□□ -1.94
UBR4-201ENST00000375218 KRTAP9-6A8MVA2 160 aa2.92□□□□□ -1.94
UBR4-201ENST00000375218 KRTAP4-7Q9BYR0 210 aa2.91□□□□□ -1.94
UBR4-201ENST00000375218 NEBP20929 6669 aa2.86□□□□□ -1.95
UBR4-201ENST00000375218 MUC19Q7Z5P9 8384 aa2.85□□□□□ -1.95
UBR4-201ENST00000375218 KRTAP8-1Q8IUC2 63 aa2.84□□□□□ -1.95
UBR4-201ENST00000375218 KRTAP19-5Q3LI72 72 aa2.84□□□□□ -1.96
UBR4-201ENST00000375218 KRTAP4-3Q9BYR4 195 aa2.81□□□□□ -1.96
UBR4-201ENST00000375218 SYNE1Q8NF91 8797 aaKnown RBP2.81□□□□□ -1.96
UBR4-201ENST00000375218 GPR98Q8WXG9 6306 aa2.8□□□□□ -1.96
UBR4-201ENST00000375218 KRTAP4-9Q9BYQ8 210 aa2.78□□□□□ -1.96
UBR4-201ENST00000375218 KRTAP4-2Q9BYR5 136 aa2.78□□□□□ -1.96
UBR4-201ENST00000375218 MT1EP04732 61 aa2.77□□□□□ -1.97
UBR4-201ENST00000375218 KRTAP2-3P0C7H8 128 aa2.75□□□□□ -1.97
UBR4-201ENST00000375218 KRTAP2-4Q9BYR9 128 aa2.75□□□□□ -1.97
UBR4-201ENST00000375218 PRM1P04553 51 aa2.75□□□□□ -1.97
UBR4-201ENST00000375218 KRTAP2-1Q9BYU5 128 aa2.75□□□□□ -1.97
UBR4-201ENST00000375218 MT1LQ93083 61 aa2.72□□□□□ -1.97
UBR4-201ENST00000375218 KRTAP5-9P26371 169 aa2.7□□□□□ -1.98
UBR4-201ENST00000375218 KRTAP5-3Q6L8H2 238 aa2.67□□□□□ -1.98
UBR4-201ENST00000375218 OBSCNQ5VST9 7968 aa2.66□□□□□ -1.98
UBR4-201ENST00000375218 KRTAP4-11Q9BYQ6 195 aa2.62□□□□□ -1.99
UBR4-201ENST00000375218 KRTAP5-5Q701N2 237 aaPredicted RBP2.58□□□□□ -2
UBR4-201ENST00000375218 MT1MQ8N339 61 aa2.58□□□□□ -2
UBR4-201ENST00000375218 SPRR2EP22531 72 aa2.56□□□□□ -2
UBR4-201ENST00000375218 SPRR2BP35325 72 aa2.56□□□□□ -2
UBR4-201ENST00000375218 SPRR2AP35326 72 aa2.56□□□□□ -2
UBR4-201ENST00000375218 KRTAP19-3Q7Z4W3 81 aa2.53□□□□□ -2
UBR4-201ENST00000375218 SPRR2FQ96RM1 72 aa2.52□□□□□ -2.01
UBR4-201ENST00000375218 SPRR2DP22532 72 aa2.49□□□□□ -2.01
UBR4-201ENST00000375218 MT1GP13640 62 aa2.48□□□□□ -2.01
UBR4-201ENST00000375218 HMCN1Q96RW7 5635 aa2.43□□□□□ -2.02
UBR4-201ENST00000375218 LCE1CQ5T751 118 aa2.4□□□□□ -2.02
UBR4-201ENST00000375218 LCE1BQ5T7P3 118 aa2.4□□□□□ -2.02
UBR4-201ENST00000375218 KRTAP6-1Q3LI64 71 aa2.39□□□□□ -2.03
UBR4-201ENST00000375218 KRTAP5-4Q6L8H1 288 aa2.33□□□□□ -2.04
UBR4-201ENST00000375218 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
UBR4-201ENST00000375218 MT4P47944 62 aa2.22□□□□□ -2.05
UBR4-201ENST00000375218 KRTAP5-7Q6L8G8 165 aa2.18□□□□□ -2.06
UBR4-201ENST00000375218 KRTAP6-2Q3LI66 62 aa2.18□□□□□ -2.06
UBR4-201ENST00000375218 MT1AP04731 61 aa2.16□□□□□ -2.06
UBR4-201ENST00000375218 KRTAP5-10Q6L8G5 202 aa2.16□□□□□ -2.06
UBR4-201ENST00000375218 KRTAP5-2Q701N4 177 aa2.15□□□□□ -2.06
UBR4-201ENST00000375218 AHNAKQ09666 5890 aaKnown RBP2.08□□□□□ -2.08
UBR4-201ENST00000375218 KRTAP20-2Q3LI61 65 aa2.07□□□□□ -2.08
UBR4-201ENST00000375218 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.01□□□□□ -2.09
UBR4-201ENST00000375218 MUC5ACP98088 5654 aa1.98□□□□□ -2.09
UBR4-201ENST00000375218 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
UBR4-201ENST00000375218 MUC5BQ9HC84 5762 aaPredicted RBP1.88□□□□□ -2.11
UBR4-201ENST00000375218 KRTAP5-8O75690 187 aa1.83□□□□□ -2.12
UBR4-201ENST00000375218 KRTAP5-11Q6L8G4 156 aa1.76□□□□□ -2.13
UBR4-201ENST00000375218 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
UBR4-201ENST00000375218 KRTAP21-2Q3LI59 83 aa1.66□□□□□ -2.14
UBR4-201ENST00000375218 KRTAP4-4Q9BYR3 166 aa1.61□□□□□ -2.15
UBR4-201ENST00000375218 PHGR1C9JFL3 82 aa1.46□□□□□ -2.18
UBR4-201ENST00000375218 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 63.1 ms