RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 KRTAP8-1Q8IUC2 63 aa3.54□□□□□ -1.84
SNRNP40-202ENST00000373720 KRTAP10-5P60370 271 aa3.53□□□□□ -1.84
SNRNP40-202ENST00000373720 MT1XP80297 61 aa3.51□□□□□ -1.85
SNRNP40-202ENST00000373720 KRTAP5-1Q6L8H4 278 aa3.5□□□□□ -1.85
SNRNP40-202ENST00000373720 SPRR5A0A1B0GTR4 108 aa3.47□□□□□ -1.85
SNRNP40-202ENST00000373720 KRTAP10-12P60413 245 aa3.47□□□□□ -1.85
SNRNP40-202ENST00000373720 FSIP2Q5CZC0 6907 aa3.47□□□□□ -1.85
SNRNP40-202ENST00000373720 LCE3AQ5TA76 89 aa3.44□□□□□ -1.86
SNRNP40-202ENST00000373720 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
SNRNP40-202ENST00000373720 CRCT1Q9UGL9 99 aa3.4□□□□□ -1.87
SNRNP40-202ENST00000373720 KRTAP12-3P60328 96 aa3.39□□□□□ -1.87
SNRNP40-202ENST00000373720 KRTAP5-4Q6L8H1 288 aa3.39□□□□□ -1.87
SNRNP40-202ENST00000373720 KRTAP5-9P26371 169 aa3.38□□□□□ -1.87
SNRNP40-202ENST00000373720 KRTAP4-4Q9BYR3 166 aa3.36□□□□□ -1.87
SNRNP40-202ENST00000373720 MT3P25713 68 aa3.35□□□□□ -1.87
SNRNP40-202ENST00000373720 KRTAP19-6Q3LI70 58 aa3.29□□□□□ -1.88
SNRNP40-202ENST00000373720 KRTAP9-6A8MVA2 160 aa3.22□□□□□ -1.89
SNRNP40-202ENST00000373720 KRTAP19-5Q3LI72 72 aa3.21□□□□□ -1.9
SNRNP40-202ENST00000373720 LCE3CQ5T5A8 94 aa3.2□□□□□ -1.9
SNRNP40-202ENST00000373720 USH2AO75445 5202 aa3.18□□□□□ -1.9
SNRNP40-202ENST00000373720 SSPOA2VEC9 5147 aa3.18□□□□□ -1.9
SNRNP40-202ENST00000373720 KRTAP19-7Q3SYF9 63 aa3.14□□□□□ -1.91
SNRNP40-202ENST00000373720 FCGBPQ9Y6R7 5405 aaPredicted RBP3.11□□□□□ -1.91
SNRNP40-202ENST00000373720 MT1EP04732 61 aa3.1□□□□□ -1.91
SNRNP40-202ENST00000373720 MACF1Q9UPN3 7388 aaKnown RBP3.1□□□□□ -1.91
SNRNP40-202ENST00000373720 SYNE2Q8WXH0 6885 aaKnown RBP3.09□□□□□ -1.92
SNRNP40-202ENST00000373720 OBSCNQ5VST9 7968 aa3.08□□□□□ -1.92
SNRNP40-202ENST00000373720 MT1LQ93083 61 aa3.07□□□□□ -1.92
SNRNP40-202ENST00000373720 INE1O15225 51 aa3.06□□□□□ -1.92
SNRNP40-202ENST00000373720 MT1GP13640 62 aa3.03□□□□□ -1.92
SNRNP40-202ENST00000373720 KRTAP19-3Q7Z4W3 81 aa2.97□□□□□ -1.93
SNRNP40-202ENST00000373720 KRTAP4-3Q9BYR4 195 aa2.97□□□□□ -1.93
SNRNP40-202ENST00000373720 LCE1FQ5T754 118 aa2.95□□□□□ -1.94
SNRNP40-202ENST00000373720 KRTAP6-3Q3LI67 103 aa2.92□□□□□ -1.94
SNRNP40-202ENST00000373720 KMT2DO14686 5537 aa2.91□□□□□ -1.94
SNRNP40-202ENST00000373720 KRTAP2-3P0C7H8 128 aa2.91□□□□□ -1.94
SNRNP40-202ENST00000373720 KRTAP2-4Q9BYR9 128 aa2.91□□□□□ -1.94
SNRNP40-202ENST00000373720 KRTAP2-1Q9BYU5 128 aa2.91□□□□□ -1.94
SNRNP40-202ENST00000373720 NEBP20929 6669 aa2.91□□□□□ -1.94
SNRNP40-202ENST00000373720 MT1MQ8N339 61 aa2.89□□□□□ -1.95
SNRNP40-202ENST00000373720 MUC12Q9UKN1 5478 aa2.85□□□□□ -1.95
SNRNP40-202ENST00000373720 SPRR2FQ96RM1 72 aa2.85□□□□□ -1.95
SNRNP40-202ENST00000373720 KRTAP5-2Q701N4 177 aa2.82□□□□□ -1.96
SNRNP40-202ENST00000373720 KRTAP20-1Q3LI63 56 aa2.76□□□□□ -1.97
SNRNP40-202ENST00000373720 MDN1Q9NU22 5596 aa2.7□□□□□ -1.98
SNRNP40-202ENST00000373720 SPRR2EP22531 72 aa2.66□□□□□ -1.98
SNRNP40-202ENST00000373720 SPRR2BP35325 72 aa2.66□□□□□ -1.98
SNRNP40-202ENST00000373720 SPRR2AP35326 72 aa2.66□□□□□ -1.98
SNRNP40-202ENST00000373720 MT1AP04731 61 aa2.65□□□□□ -1.99
SNRNP40-202ENST00000373720 KRTAP5-5Q701N2 237 aaPredicted RBP2.61□□□□□ -1.99
SNRNP40-202ENST00000373720 SPRR2DP22532 72 aa2.58□□□□□ -2
SNRNP40-202ENST00000373720 LCE3EQ5T5B0 92 aa2.53□□□□□ -2
SNRNP40-202ENST00000373720 KRTAP6-1Q3LI64 71 aa2.51□□□□□ -2.01
SNRNP40-202ENST00000373720 DSTQ03001 7570 aaKnown RBP2.5□□□□□ -2.01
SNRNP40-202ENST00000373720 KRTAP12-4P60329 112 aa2.48□□□□□ -2.01
SNRNP40-202ENST00000373720 LCE3DQ9BYE3 92 aa2.45□□□□□ -2.02
SNRNP40-202ENST00000373720 GPR98Q8WXG9 6306 aa2.44□□□□□ -2.02
SNRNP40-202ENST00000373720 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
SNRNP40-202ENST00000373720 LCE1BQ5T7P3 118 aa2.41□□□□□ -2.02
SNRNP40-202ENST00000373720 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
SNRNP40-202ENST00000373720 SYNE1Q8NF91 8797 aaKnown RBP2.35□□□□□ -2.03
SNRNP40-202ENST00000373720 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
SNRNP40-202ENST00000373720 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
SNRNP40-202ENST00000373720 HMCN1Q96RW7 5635 aa2.22□□□□□ -2.05
SNRNP40-202ENST00000373720 KRTAP20-2Q3LI61 65 aa2.22□□□□□ -2.05
SNRNP40-202ENST00000373720 KRTAP5-10Q6L8G5 202 aa2.22□□□□□ -2.05
SNRNP40-202ENST00000373720 KRTAP5-7Q6L8G8 165 aa2.17□□□□□ -2.06
SNRNP40-202ENST00000373720 MT4P47944 62 aa2.14□□□□□ -2.07
SNRNP40-202ENST00000373720 PRM1P04553 51 aa2.1□□□□□ -2.07
SNRNP40-202ENST00000373720 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
SNRNP40-202ENST00000373720 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
SNRNP40-202ENST00000373720 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
SNRNP40-202ENST00000373720 MUC5ACP98088 5654 aa1.86□□□□□ -2.11
SNRNP40-202ENST00000373720 KRTAP21-2Q3LI59 83 aa1.73□□□□□ -2.13
SNRNP40-202ENST00000373720 PHGR1C9JFL3 82 aa1.43□□□□□ -2.18
SNRNP40-202ENST00000373720 KRTAP21-1Q3LI58 79 aa1.4□□□□□ -2.19
SNRNP40-202ENST00000373720 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 136 ms