RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 A0A0A0MQY5 61 aa4.84□□□□□ -1.63
PTPRF-202ENST00000372405 SPRR2FQ96RM1 72 aa4.82□□□□□ -1.64
PTPRF-202ENST00000372405 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
PTPRF-202ENST00000372405 KRTAP9-6A0A140TA67 174 aa4.79□□□□□ -1.64
PTPRF-202ENST00000372405 KRTAP19-3Q7Z4W3 81 aa4.76□□□□□ -1.65
PTPRF-202ENST00000372405 KRTAP19-4Q3LI73 84 aa4.76□□□□□ -1.65
PTPRF-202ENST00000372405 KRTAP5-9P26371 169 aa4.74□□□□□ -1.65
PTPRF-202ENST00000372405 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.71□□□□□ -1.66
PTPRF-202ENST00000372405 MT1GP13640 62 aa4.7□□□□□ -1.66
PTPRF-202ENST00000372405 MT1MQ8N339 61 aa4.69□□□□□ -1.66
PTPRF-202ENST00000372405 KRTAP9-6A8MVA2 160 aa4.69□□□□□ -1.66
PTPRF-202ENST00000372405 LCE5AQ5TCM9 118 aa4.69□□□□□ -1.66
PTPRF-202ENST00000372405 MDN1Q9NU22 5596 aa4.68□□□□□ -1.66
PTPRF-202ENST00000372405 KRTAP4-3Q9BYR4 195 aa4.66□□□□□ -1.66
PTPRF-202ENST00000372405 LCE1AQ5T7P2 110 aa4.62□□□□□ -1.67
PTPRF-202ENST00000372405 KRTAP6-3Q3LI67 103 aa4.6□□□□□ -1.67
PTPRF-202ENST00000372405 SPRR2EP22531 72 aa4.54□□□□□ -1.68
PTPRF-202ENST00000372405 SPRR2BP35325 72 aa4.54□□□□□ -1.68
PTPRF-202ENST00000372405 SPRR2AP35326 72 aa4.54□□□□□ -1.68
PTPRF-202ENST00000372405 DSTQ03001 7570 aaKnown RBP4.52□□□□□ -1.69
PTPRF-202ENST00000372405 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
PTPRF-202ENST00000372405 KRTAP9-7A8MTY7 169 aa4.41□□□□□ -1.7
PTPRF-202ENST00000372405 SPRR2DP22532 72 aa4.36□□□□□ -1.71
PTPRF-202ENST00000372405 NEBP20929 6669 aa4.31□□□□□ -1.72
PTPRF-202ENST00000372405 KRTAP2-3P0C7H8 128 aa4.31□□□□□ -1.72
PTPRF-202ENST00000372405 KRTAP2-4Q9BYR9 128 aa4.31□□□□□ -1.72
PTPRF-202ENST00000372405 KRTAP2-1Q9BYU5 128 aa4.31□□□□□ -1.72
PTPRF-202ENST00000372405 INE1O15225 51 aa4.3□□□□□ -1.72
PTPRF-202ENST00000372405 KRTAP5-5Q701N2 237 aaPredicted RBP4.24□□□□□ -1.73
PTPRF-202ENST00000372405 LCE3BQ5TA77 95 aa4.19□□□□□ -1.74
PTPRF-202ENST00000372405 KRTAP6-1Q3LI64 71 aa4.14□□□□□ -1.75
PTPRF-202ENST00000372405 MT1AP04731 61 aa4.14□□□□□ -1.75
PTPRF-202ENST00000372405 SYNE1Q8NF91 8797 aaKnown RBP4.04□□□□□ -1.76
PTPRF-202ENST00000372405 KRTAP5-4Q6L8H1 288 aa4□□□□□ -1.77
PTPRF-202ENST00000372405 KRTAP9-4Q9BYQ2 154 aa3.93□□□□□ -1.78
PTPRF-202ENST00000372405 KRTAP2-2Q9BYT5 123 aa3.91□□□□□ -1.78
PTPRF-202ENST00000372405 KRTAP20-1Q3LI63 56 aa3.89□□□□□ -1.79
PTPRF-202ENST00000372405 KRTAP4-9Q9BYQ8 210 aa3.87□□□□□ -1.79
PTPRF-202ENST00000372405 KRTAP12-4P60329 112 aa3.84□□□□□ -1.79
PTPRF-202ENST00000372405 LCE4AQ5TA78 99 aa3.84□□□□□ -1.79
PTPRF-202ENST00000372405 KRTAP4-6Q9BYQ5 205 aa3.83□□□□□ -1.8
PTPRF-202ENST00000372405 MT4P47944 62 aa3.82□□□□□ -1.8
PTPRF-202ENST00000372405 KRTAP6-2Q3LI66 62 aa3.8□□□□□ -1.8
PTPRF-202ENST00000372405 LCE1DQ5T752 114 aa3.74□□□□□ -1.81
PTPRF-202ENST00000372405 HMCN1Q96RW7 5635 aa3.74□□□□□ -1.81
PTPRF-202ENST00000372405 KRTAP20-2Q3LI61 65 aa3.73□□□□□ -1.81
PTPRF-202ENST00000372405 MT3P25713 68 aa3.72□□□□□ -1.81
PTPRF-202ENST00000372405 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.83
PTPRF-202ENST00000372405 KRTAP5-2Q701N4 177 aa3.64□□□□□ -1.83
PTPRF-202ENST00000372405 KRTAP5-3Q6L8H2 238 aa3.6□□□□□ -1.83
PTPRF-202ENST00000372405 OBSCNQ5VST9 7968 aa3.55□□□□□ -1.84
PTPRF-202ENST00000372405 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
PTPRF-202ENST00000372405 AHNAK2Q8IVF2 5795 aa3.24□□□□□ -1.89
PTPRF-202ENST00000372405 LCE1EQ5T753 118 aa3.21□□□□□ -1.89
PTPRF-202ENST00000372405 KRTAP4-11Q9BYQ6 195 aa3.21□□□□□ -1.9
PTPRF-202ENST00000372405 PRM1P04553 51 aa3.2□□□□□ -1.9
PTPRF-202ENST00000372405 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.91
PTPRF-202ENST00000372405 GPR98Q8WXG9 6306 aa3.12□□□□□ -1.91
PTPRF-202ENST00000372405 KRTAP5-8O75690 187 aa3.11□□□□□ -1.91
PTPRF-202ENST00000372405 MUC5ACP98088 5654 aa3.09□□□□□ -1.92
PTPRF-202ENST00000372405 KRTAP5-10Q6L8G5 202 aa3.07□□□□□ -1.92
PTPRF-202ENST00000372405 KRTAP4-2Q9BYR5 136 aa3.05□□□□□ -1.92
PTPRF-202ENST00000372405 LCE1BQ5T7P3 118 aa3.05□□□□□ -1.92
PTPRF-202ENST00000372405 LCE1CQ5T751 118 aa3.01□□□□□ -1.93
PTPRF-202ENST00000372405 KRTAP5-7Q6L8G8 165 aa3□□□□□ -1.93
PTPRF-202ENST00000372405 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.83□□□□□ -1.96
PTPRF-202ENST00000372405 KRTAP21-2Q3LI59 83 aa2.72□□□□□ -1.97
PTPRF-202ENST00000372405 KRTAP9-9Q9BYP9 154 aa2.72□□□□□ -1.97
PTPRF-202ENST00000372405 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
PTPRF-202ENST00000372405 KRTAP5-11Q6L8G4 156 aa2.65□□□□□ -1.98
PTPRF-202ENST00000372405 KRTAP4-12Q9BQ66 201 aa2.53□□□□□ -2
PTPRF-202ENST00000372405 LCE1FQ5T754 118 aa2.47□□□□□ -2.01
PTPRF-202ENST00000372405 KRTAP4-4Q9BYR3 166 aa2.43□□□□□ -2.02
PTPRF-202ENST00000372405 AHNAKQ09666 5890 aaKnown RBP2.38□□□□□ -2.03
PTPRF-202ENST00000372405 PHGR1C9JFL3 82 aa2.29□□□□□ -2.04
PTPRF-202ENST00000372405 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
PTPRF-202ENST00000372405 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
PTPRF-202ENST00000372405 MUC16Q8WXI7 14507 aa1.45□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms