RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 LCE2AQ5TA79 106 aaPredicted RBP3.84□□□□□ -1.79
SMARCA1-201ENST00000371121 CRCT1Q9UGL9 99 aa3.81□□□□□ -1.8
SMARCA1-201ENST00000371121 KRTAP4-3Q9BYR4 195 aa3.81□□□□□ -1.8
SMARCA1-201ENST00000371121 FCGBPQ9Y6R7 5405 aaPredicted RBP3.79□□□□□ -1.8
SMARCA1-201ENST00000371121 MUC12Q9UKN1 5478 aa3.77□□□□□ -1.81
SMARCA1-201ENST00000371121 KRTAP12-4P60329 112 aa3.73□□□□□ -1.81
SMARCA1-201ENST00000371121 MT1GP13640 62 aa3.68□□□□□ -1.82
SMARCA1-201ENST00000371121 DSTQ03001 7570 aaKnown RBP3.68□□□□□ -1.82
SMARCA1-201ENST00000371121 KRTAP9-7A8MTY7 169 aa3.67□□□□□ -1.82
SMARCA1-201ENST00000371121 KRTAP19-4Q3LI73 84 aa3.66□□□□□ -1.82
SMARCA1-201ENST00000371121 FSIP2Q5CZC0 6907 aa3.61□□□□□ -1.83
SMARCA1-201ENST00000371121 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.6□□□□□ -1.83
SMARCA1-201ENST00000371121 KRTAP4-9Q9BYQ8 210 aa3.6□□□□□ -1.83
SMARCA1-201ENST00000371121 MT1MQ8N339 61 aa3.56□□□□□ -1.84
SMARCA1-201ENST00000371121 KRTAP5-5Q701N2 237 aaPredicted RBP3.51□□□□□ -1.85
SMARCA1-201ENST00000371121 LCE3BQ5TA77 95 aa3.46□□□□□ -1.86
SMARCA1-201ENST00000371121 KRTAP19-3Q7Z4W3 81 aa3.46□□□□□ -1.86
SMARCA1-201ENST00000371121 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.86
SMARCA1-201ENST00000371121 KRTAP19-6Q3LI70 58 aa3.4□□□□□ -1.87
SMARCA1-201ENST00000371121 MT1AP04731 61 aa3.39□□□□□ -1.87
SMARCA1-201ENST00000371121 KRTAP6-1Q3LI64 71 aa3.37□□□□□ -1.87
SMARCA1-201ENST00000371121 LCE5AQ5TCM9 118 aa3.37□□□□□ -1.87
SMARCA1-201ENST00000371121 PRM1P04553 51 aa3.37□□□□□ -1.87
SMARCA1-201ENST00000371121 MDN1Q9NU22 5596 aa3.3□□□□□ -1.88
SMARCA1-201ENST00000371121 KRTAP6-3Q3LI67 103 aa3.29□□□□□ -1.88
SMARCA1-201ENST00000371121 LCE3DQ9BYE3 92 aa3.28□□□□□ -1.88
SMARCA1-201ENST00000371121 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
SMARCA1-201ENST00000371121 LCE3EQ5T5B0 92 aa3.26□□□□□ -1.89
SMARCA1-201ENST00000371121 MACF1Q9UPN3 7388 aaKnown RBP3.24□□□□□ -1.89
SMARCA1-201ENST00000371121 NEBP20929 6669 aa3.21□□□□□ -1.9
SMARCA1-201ENST00000371121 KRTAP20-1Q3LI63 56 aa3.19□□□□□ -1.9
SMARCA1-201ENST00000371121 KRTAP6-2Q3LI66 62 aa3.19□□□□□ -1.9
SMARCA1-201ENST00000371121 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
SMARCA1-201ENST00000371121 LCE1AQ5T7P2 110 aa3.12□□□□□ -1.91
SMARCA1-201ENST00000371121 SPRR2FQ96RM1 72 aa3.12□□□□□ -1.91
SMARCA1-201ENST00000371121 KRTAP2-2Q9BYT5 123 aa3.1□□□□□ -1.91
SMARCA1-201ENST00000371121 KRTAP9-4Q9BYQ2 154 aa3□□□□□ -1.93
SMARCA1-201ENST00000371121 KRTAP5-9P26371 169 aa2.93□□□□□ -1.94
SMARCA1-201ENST00000371121 GPR98Q8WXG9 6306 aa2.89□□□□□ -1.95
SMARCA1-201ENST00000371121 LCE1EQ5T753 118 aa2.86□□□□□ -1.95
SMARCA1-201ENST00000371121 LCE1DQ5T752 114 aa2.78□□□□□ -1.96
SMARCA1-201ENST00000371121 MT3P25713 68 aa2.76□□□□□ -1.97
SMARCA1-201ENST00000371121 SPRR2EP22531 72 aa2.74□□□□□ -1.97
SMARCA1-201ENST00000371121 SPRR2AP35326 72 aa2.74□□□□□ -1.97
SMARCA1-201ENST00000371121 SPRR2BP35325 72 aa2.69□□□□□ -1.98
SMARCA1-201ENST00000371121 MUC5ACP98088 5654 aa2.66□□□□□ -1.98
SMARCA1-201ENST00000371121 SPRR2DP22532 72 aa2.61□□□□□ -1.99
SMARCA1-201ENST00000371121 KRTAP5-4Q6L8H1 288 aa2.58□□□□□ -2
SMARCA1-201ENST00000371121 KRTAP5-7Q6L8G8 165 aa2.57□□□□□ -2
SMARCA1-201ENST00000371121 KRTAP5-10Q6L8G5 202 aa2.57□□□□□ -2
SMARCA1-201ENST00000371121 KRTAP9-9Q9BYP9 154 aa2.56□□□□□ -2
SMARCA1-201ENST00000371121 AHNAK2Q8IVF2 5795 aa2.56□□□□□ -2
SMARCA1-201ENST00000371121 KRTAP4-11Q9BYQ6 195 aa2.55□□□□□ -2
SMARCA1-201ENST00000371121 KRTAP4-6Q9BYQ5 205 aa2.52□□□□□ -2.01
SMARCA1-201ENST00000371121 KRTAP5-2Q701N4 177 aa2.5□□□□□ -2.01
SMARCA1-201ENST00000371121 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
SMARCA1-201ENST00000371121 LCE4AQ5TA78 99 aa2.49□□□□□ -2.01
SMARCA1-201ENST00000371121 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
SMARCA1-201ENST00000371121 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
SMARCA1-201ENST00000371121 KRTAP20-2Q3LI61 65 aa2.39□□□□□ -2.03
SMARCA1-201ENST00000371121 KRTAP5-3Q6L8H2 238 aa2.34□□□□□ -2.03
SMARCA1-201ENST00000371121 MT4P47944 62 aa2.33□□□□□ -2.04
SMARCA1-201ENST00000371121 AHNAKQ09666 5890 aaKnown RBP2.33□□□□□ -2.04
SMARCA1-201ENST00000371121 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
SMARCA1-201ENST00000371121 KRTAP4-12Q9BQ66 201 aa2.31□□□□□ -2.04
SMARCA1-201ENST00000371121 LCE1FQ5T754 118 aa2.3□□□□□ -2.04
SMARCA1-201ENST00000371121 KRTAP4-2Q9BYR5 136 aa2.23□□□□□ -2.05
SMARCA1-201ENST00000371121 LCE1BQ5T7P3 118 aa2.21□□□□□ -2.05
SMARCA1-201ENST00000371121 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
SMARCA1-201ENST00000371121 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
SMARCA1-201ENST00000371121 LCE1CQ5T751 118 aa2.14□□□□□ -2.07
SMARCA1-201ENST00000371121 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.07□□□□□ -2.08
SMARCA1-201ENST00000371121 KRTAP4-4Q9BYR3 166 aa2.01□□□□□ -2.09
SMARCA1-201ENST00000371121 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
SMARCA1-201ENST00000371121 KRTAP5-11Q6L8G4 156 aa1.78□□□□□ -2.12
SMARCA1-201ENST00000371121 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
SMARCA1-201ENST00000371121 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 84 ms