RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 KRTAP19-6Q3LI70 58 aa4.02□□□□□ -1.77
TPM3-212ENST00000368533 MUC12Q9UKN1 5478 aa4□□□□□ -1.77
TPM3-212ENST00000368533 KRTAP19-5Q3LI72 72 aa3.99□□□□□ -1.77
TPM3-212ENST00000368533 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
TPM3-212ENST00000368533 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
TPM3-212ENST00000368533 KRTAP4-12Q9BQ66 201 aa3.9□□□□□ -1.78
TPM3-212ENST00000368533 CRCT1Q9UGL9 99 aa3.88□□□□□ -1.79
TPM3-212ENST00000368533 DSTQ03001 7570 aaKnown RBP3.87□□□□□ -1.79
TPM3-212ENST00000368533 KRTAP19-7Q3SYF9 63 aa3.87□□□□□ -1.79
TPM3-212ENST00000368533 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.86□□□□□ -1.79
TPM3-212ENST00000368533 KRTAP4-7Q9BYR0 210 aa3.83□□□□□ -1.8
TPM3-212ENST00000368533 LCE3CQ5T5A8 94 aa3.81□□□□□ -1.8
TPM3-212ENST00000368533 MDN1Q9NU22 5596 aa3.8□□□□□ -1.8
TPM3-212ENST00000368533 MT1EP04732 61 aa3.77□□□□□ -1.81
TPM3-212ENST00000368533 SPRR2FQ96RM1 72 aa3.77□□□□□ -1.81
TPM3-212ENST00000368533 KRTAP9-6A8MVA2 160 aa3.73□□□□□ -1.81
TPM3-212ENST00000368533 LCE3BQ5TA77 95 aa3.72□□□□□ -1.81
TPM3-212ENST00000368533 MT1LQ93083 61 aa3.71□□□□□ -1.82
TPM3-212ENST00000368533 KRTAP4-3Q9BYR4 195 aa3.7□□□□□ -1.82
TPM3-212ENST00000368533 KRTAP19-3Q7Z4W3 81 aa3.6□□□□□ -1.83
TPM3-212ENST00000368533 KRTAP2-3P0C7H8 128 aa3.56□□□□□ -1.84
TPM3-212ENST00000368533 MT1MQ8N339 61 aa3.56□□□□□ -1.84
TPM3-212ENST00000368533 KRTAP2-4Q9BYR9 128 aa3.56□□□□□ -1.84
TPM3-212ENST00000368533 KRTAP2-1Q9BYU5 128 aa3.56□□□□□ -1.84
TPM3-212ENST00000368533 MT1GP13640 62 aa3.55□□□□□ -1.84
TPM3-212ENST00000368533 SPRR2EP22531 72 aa3.53□□□□□ -1.85
TPM3-212ENST00000368533 SPRR2BP35325 72 aa3.53□□□□□ -1.85
TPM3-212ENST00000368533 SPRR2AP35326 72 aa3.53□□□□□ -1.85
TPM3-212ENST00000368533 LCE1AQ5T7P2 110 aa3.51□□□□□ -1.85
TPM3-212ENST00000368533 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
TPM3-212ENST00000368533 KRTAP5-9P26371 169 aa3.48□□□□□ -1.85
TPM3-212ENST00000368533 SYNE1Q8NF91 8797 aaKnown RBP3.46□□□□□ -1.85
TPM3-212ENST00000368533 LCE1DQ5T752 114 aa3.4□□□□□ -1.86
TPM3-212ENST00000368533 KRTAP6-3Q3LI67 103 aa3.4□□□□□ -1.87
TPM3-212ENST00000368533 KRTAP12-4P60329 112 aa3.39□□□□□ -1.87
TPM3-212ENST00000368533 SPRR2DP22532 72 aa3.37□□□□□ -1.87
TPM3-212ENST00000368533 KRTAP5-3Q6L8H2 238 aa3.34□□□□□ -1.88
TPM3-212ENST00000368533 OBSCNQ5VST9 7968 aa3.33□□□□□ -1.88
TPM3-212ENST00000368533 NEBP20929 6669 aa3.32□□□□□ -1.88
TPM3-212ENST00000368533 KRTAP2-2Q9BYT5 123 aa3.25□□□□□ -1.89
TPM3-212ENST00000368533 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
TPM3-212ENST00000368533 KRTAP4-9Q9BYQ8 210 aa3.22□□□□□ -1.89
TPM3-212ENST00000368533 KRTAP6-1Q3LI64 71 aa3.2□□□□□ -1.9
TPM3-212ENST00000368533 KRTAP5-5Q701N2 237 aaPredicted RBP3.12□□□□□ -1.91
TPM3-212ENST00000368533 KRTAP4-2Q9BYR5 136 aa3.1□□□□□ -1.91
TPM3-212ENST00000368533 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
TPM3-212ENST00000368533 MT1AP04731 61 aa3.09□□□□□ -1.91
TPM3-212ENST00000368533 PRM1P04553 51 aa3.07□□□□□ -1.92
TPM3-212ENST00000368533 MT3P25713 68 aa3.07□□□□□ -1.92
TPM3-212ENST00000368533 MT4P47944 62 aa3.06□□□□□ -1.92
TPM3-212ENST00000368533 LCE3DQ9BYE3 92 aa2.98□□□□□ -1.93
TPM3-212ENST00000368533 HMCN1Q96RW7 5635 aa2.96□□□□□ -1.94
TPM3-212ENST00000368533 KRTAP20-1Q3LI63 56 aa2.96□□□□□ -1.94
TPM3-212ENST00000368533 KRTAP6-2Q3LI66 62 aa2.95□□□□□ -1.94
TPM3-212ENST00000368533 KRTAP5-4Q6L8H1 288 aa2.9□□□□□ -1.95
TPM3-212ENST00000368533 KRTAP20-2Q3LI61 65 aa2.82□□□□□ -1.96
TPM3-212ENST00000368533 LCE1EQ5T753 118 aa2.79□□□□□ -1.96
TPM3-212ENST00000368533 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
TPM3-212ENST00000368533 AHNAK2Q8IVF2 5795 aa2.51□□□□□ -2.01
TPM3-212ENST00000368533 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.49□□□□□ -2.01
TPM3-212ENST00000368533 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
TPM3-212ENST00000368533 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
TPM3-212ENST00000368533 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
TPM3-212ENST00000368533 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
TPM3-212ENST00000368533 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
TPM3-212ENST00000368533 KRTAP5-8O75690 187 aa2.32□□□□□ -2.04
TPM3-212ENST00000368533 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
TPM3-212ENST00000368533 GPR98Q8WXG9 6306 aa2.3□□□□□ -2.04
TPM3-212ENST00000368533 KRTAP5-10Q6L8G5 202 aa2.26□□□□□ -2.05
TPM3-212ENST00000368533 LCE1CQ5T751 118 aa2.19□□□□□ -2.06
TPM3-212ENST00000368533 KRTAP5-7Q6L8G8 165 aa2.09□□□□□ -2.07
TPM3-212ENST00000368533 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
TPM3-212ENST00000368533 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
TPM3-212ENST00000368533 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
TPM3-212ENST00000368533 AHNAKQ09666 5890 aaKnown RBP1.84□□□□□ -2.11
TPM3-212ENST00000368533 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
TPM3-212ENST00000368533 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 68.2 ms