RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 KRTAP6-3Q3LI67 103 aa8.13□□□□□ -1.11
SDF4-202ENST00000360001 KRTAP19-3Q7Z4W3 81 aa8.12□□□□□ -1.11
SDF4-202ENST00000360001 LCE3CQ5T5A8 94 aa8.1□□□□□ -1.11
SDF4-202ENST00000360001 KRTAP19-4Q3LI73 84 aa8.09□□□□□ -1.11
SDF4-202ENST00000360001 MDN1Q9NU22 5596 aa8.08□□□□□ -1.12
SDF4-202ENST00000360001 SPRR5A0A1B0GTR4 108 aa8.05□□□□□ -1.12
SDF4-202ENST00000360001 MT1GP13640 62 aa8.02□□□□□ -1.12
SDF4-202ENST00000360001 KRTAP4-7Q9BYR0 210 aa8.01□□□□□ -1.13
SDF4-202ENST00000360001 LCE5AQ5TCM9 118 aa7.99□□□□□ -1.13
SDF4-202ENST00000360001 LCE1AQ5T7P2 110 aa7.98□□□□□ -1.13
SDF4-202ENST00000360001 MT1MQ8N339 61 aa7.95□□□□□ -1.14
SDF4-202ENST00000360001 KRTAP9-7A8MTY7 169 aa7.9□□□□□ -1.14
SDF4-202ENST00000360001 SPRR2EP22531 72 aa7.9□□□□□ -1.14
SDF4-202ENST00000360001 SPRR2BP35325 72 aa7.9□□□□□ -1.14
SDF4-202ENST00000360001 SPRR2AP35326 72 aa7.9□□□□□ -1.14
SDF4-202ENST00000360001 KRTAP4-3Q9BYR4 195 aa7.82□□□□□ -1.16
SDF4-202ENST00000360001 LUZP6Q538Z0 58 aa7.75□□□□□ -1.17
SDF4-202ENST00000360001 KRTAP9-6A8MVA2 160 aa7.71□□□□□ -1.18
SDF4-202ENST00000360001 DSTQ03001 7570 aaKnown RBP7.64□□□□□ -1.19
SDF4-202ENST00000360001 NEBP20929 6669 aa7.64□□□□□ -1.19
SDF4-202ENST00000360001 SPRR2DP22532 72 aa7.61□□□□□ -1.19
SDF4-202ENST00000360001 LOC100996750A0A140TA64 210 aa7.53□□□□□ -1.2
SDF4-202ENST00000360001 NDUFAF8A1L188 74 aa7.48□□□□□ -1.21
SDF4-202ENST00000360001 LCE3BQ5TA77 95 aa7.32□□□□□ -1.24
SDF4-202ENST00000360001 KRTAP5-5Q701N2 237 aaPredicted RBP7.19□□□□□ -1.26
SDF4-202ENST00000360001 KRTAP2-3P0C7H8 128 aa7.11□□□□□ -1.27
SDF4-202ENST00000360001 KRTAP2-4Q9BYR9 128 aa7.11□□□□□ -1.27
SDF4-202ENST00000360001 KRTAP2-1Q9BYU5 128 aa7.05□□□□□ -1.28
SDF4-202ENST00000360001 MT1AP04731 61 aa7.01□□□□□ -1.29
SDF4-202ENST00000360001 KRTAP20-1Q3LI63 56 aa7□□□□□ -1.29
SDF4-202ENST00000360001 KRTAP6-1Q3LI64 71 aa6.97□□□□□ -1.29
SDF4-202ENST00000360001 KRTAP2-2Q9BYT5 123 aa6.96□□□□□ -1.3
SDF4-202ENST00000360001 KRTAP5-4Q6L8H1 288 aa6.89□□□□□ -1.31
SDF4-202ENST00000360001 SYNE1Q8NF91 8797 aaKnown RBP6.82□□□□□ -1.32
SDF4-202ENST00000360001 LCE4AQ5TA78 99 aa6.75□□□□□ -1.33
SDF4-202ENST00000360001 KRTAP9-4Q9BYQ2 154 aa6.67□□□□□ -1.34
SDF4-202ENST00000360001 KRTAP12-4P60329 112 aa6.65□□□□□ -1.34
SDF4-202ENST00000360001 MT4P47944 62 aa6.62□□□□□ -1.35
SDF4-202ENST00000360001 KRTAP4-6Q9BYQ5 205 aa6.58□□□□□ -1.36
SDF4-202ENST00000360001 KRTAP4-9Q9BYQ8 210 aa6.58□□□□□ -1.36
SDF4-202ENST00000360001 LCE1DQ5T752 114 aa6.53□□□□□ -1.36
SDF4-202ENST00000360001 HMCN1Q96RW7 5635 aa6.5□□□□□ -1.37
SDF4-202ENST00000360001 KRTAP20-2Q3LI61 65 aa6.44□□□□□ -1.38
SDF4-202ENST00000360001 KRTAP6-2Q3LI66 62 aa6.42□□□□□ -1.38
SDF4-202ENST00000360001 MT3P25713 68 aa6.34□□□□□ -1.39
SDF4-202ENST00000360001 KRTAP5-2Q701N4 177 aa6.24□□□□□ -1.41
SDF4-202ENST00000360001 KRTAP5-3Q6L8H2 238 aa6.22□□□□□ -1.41
SDF4-202ENST00000360001 INE1O15225 51 aa6.12□□□□□ -1.43
SDF4-202ENST00000360001 LCE3DQ9BYE3 92 aa6.06□□□□□ -1.44
SDF4-202ENST00000360001 OBSCNQ5VST9 7968 aa5.93□□□□□ -1.46
SDF4-202ENST00000360001 LCE3EQ5T5B0 92 aa5.89□□□□□ -1.47
SDF4-202ENST00000360001 AHNAK2Q8IVF2 5795 aa5.79□□□□□ -1.48
SDF4-202ENST00000360001 KRTAP9-9Q9BYP9 154 aa5.71□□□□□ -1.49
SDF4-202ENST00000360001 KRTAP4-11Q9BYQ6 195 aa5.6□□□□□ -1.51
SDF4-202ENST00000360001 LCE1EQ5T753 118 aa5.53□□□□□ -1.52
SDF4-202ENST00000360001 KRTAP5-10Q6L8G5 202 aa5.46□□□□□ -1.54
SDF4-202ENST00000360001 LCE1FQ5T754 118 aa5.43□□□□□ -1.54
SDF4-202ENST00000360001 KRTAP5-1Q6L8H4 278 aa5.42□□□□□ -1.54
SDF4-202ENST00000360001 KRTAP5-8O75690 187 aa5.4□□□□□ -1.55
SDF4-202ENST00000360001 GPR98Q8WXG9 6306 aa5.27□□□□□ -1.57
SDF4-202ENST00000360001 MUC5ACP98088 5654 aa5.26□□□□□ -1.57
SDF4-202ENST00000360001 KRTAP5-7Q6L8G8 165 aa5.21□□□□□ -1.58
SDF4-202ENST00000360001 LCE1BQ5T7P3 118 aa5.19□□□□□ -1.58
SDF4-202ENST00000360001 KRTAP4-2Q9BYR5 136 aa5.19□□□□□ -1.58
SDF4-202ENST00000360001 LCE1CQ5T751 118 aa5.16□□□□□ -1.58
SDF4-202ENST00000360001 PRM1P04553 51 aa5.11□□□□□ -1.59
SDF4-202ENST00000360001 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.82□□□□□ -1.64
SDF4-202ENST00000360001 KRTAP4-12Q9BQ66 201 aa4.69□□□□□ -1.66
SDF4-202ENST00000360001 MUC5BQ9HC84 5762 aaPredicted RBP4.68□□□□□ -1.66
SDF4-202ENST00000360001 KRTAP21-2Q3LI59 83 aa4.56□□□□□ -1.68
SDF4-202ENST00000360001 KRTAP5-11Q6L8G4 156 aa4.56□□□□□ -1.68
SDF4-202ENST00000360001 AHNAKQ09666 5890 aaKnown RBP4.4□□□□□ -1.71
SDF4-202ENST00000360001 KRTAP4-4Q9BYR3 166 aa4.07□□□□□ -1.76
SDF4-202ENST00000360001 PHGR1C9JFL3 82 aa3.93□□□□□ -1.78
SDF4-202ENST00000360001 MUC19Q7Z5P9 8384 aa3.54□□□□□ -1.84
SDF4-202ENST00000360001 KRTAP21-1Q3LI58 79 aa3.11□□□□□ -1.91
SDF4-202ENST00000360001 MUC16Q8WXI7 14507 aa2.53□□□□□ -2
Retrieved 77 of 20,778 RNA–protein pairs in 62.9 ms