RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 MT1EP04732 61 aa7.28□□□□□ -1.24
CLN3-205ENST00000359984 KRTAP9-7A8MTY7 169 aa7.2□□□□□ -1.26
CLN3-205ENST00000359984 MUC12Q9UKN1 5478 aa7.19□□□□□ -1.26
CLN3-205ENST00000359984 MT1LQ93083 61 aa7.11□□□□□ -1.27
CLN3-205ENST00000359984 SPRR5A0A1B0GTR4 108 aa7.1□□□□□ -1.27
CLN3-205ENST00000359984 MDN1Q9NU22 5596 aa7.05□□□□□ -1.28
CLN3-205ENST00000359984 KRTAP19-3Q7Z4W3 81 aa7.04□□□□□ -1.28
CLN3-205ENST00000359984 LCE1AQ5T7P2 110 aa7.03□□□□□ -1.28
CLN3-205ENST00000359984 SPRR2EP22531 72 aa7□□□□□ -1.29
CLN3-205ENST00000359984 SPRR2BP35325 72 aa7□□□□□ -1.29
CLN3-205ENST00000359984 SPRR2AP35326 72 aa7□□□□□ -1.29
CLN3-205ENST00000359984 MT1GP13640 62 aa6.96□□□□□ -1.3
CLN3-205ENST00000359984 LCE5AQ5TCM9 118 aa6.96□□□□□ -1.3
CLN3-205ENST00000359984 KRTAP19-4Q3LI73 84 aa6.9□□□□□ -1.31
CLN3-205ENST00000359984 MT1MQ8N339 61 aa6.87□□□□□ -1.31
CLN3-205ENST00000359984 LCE3CQ5T5A8 94 aa6.87□□□□□ -1.31
CLN3-205ENST00000359984 KRTAP4-7Q9BYR0 210 aa6.86□□□□□ -1.31
CLN3-205ENST00000359984 NEBP20929 6669 aa6.83□□□□□ -1.32
CLN3-205ENST00000359984 INE1O15225 51 aa6.77□□□□□ -1.33
CLN3-205ENST00000359984 KRTAP4-3Q9BYR4 195 aa6.75□□□□□ -1.33
CLN3-205ENST00000359984 SPRR2DP22532 72 aa6.75□□□□□ -1.33
CLN3-205ENST00000359984 DSTQ03001 7570 aaKnown RBP6.62□□□□□ -1.35
CLN3-205ENST00000359984 KRTAP9-6A8MVA2 160 aa6.51□□□□□ -1.37
CLN3-205ENST00000359984 LCE3BQ5TA77 95 aa6.5□□□□□ -1.37
CLN3-205ENST00000359984 LOC100996750A0A140TA64 210 aa6.45□□□□□ -1.38
CLN3-205ENST00000359984 KRTAP2-3P0C7H8 128 aa6.43□□□□□ -1.38
CLN3-205ENST00000359984 KRTAP2-4Q9BYR9 128 aa6.43□□□□□ -1.38
CLN3-205ENST00000359984 KRTAP20-1Q3LI63 56 aa6.37□□□□□ -1.39
CLN3-205ENST00000359984 KRTAP2-2Q9BYT5 123 aa6.28□□□□□ -1.4
CLN3-205ENST00000359984 KRTAP2-1Q9BYU5 128 aa6.28□□□□□ -1.4
CLN3-205ENST00000359984 KRTAP5-5Q701N2 237 aaPredicted RBP6.22□□□□□ -1.41
CLN3-205ENST00000359984 KRTAP5-4Q6L8H1 288 aa6.06□□□□□ -1.44
CLN3-205ENST00000359984 MT1AP04731 61 aa6.03□□□□□ -1.44
CLN3-205ENST00000359984 KRTAP6-1Q3LI64 71 aa5.99□□□□□ -1.45
CLN3-205ENST00000359984 LCE4AQ5TA78 99 aa5.98□□□□□ -1.45
CLN3-205ENST00000359984 SYNE1Q8NF91 8797 aaKnown RBP5.88□□□□□ -1.47
CLN3-205ENST00000359984 KRTAP4-9Q9BYQ8 210 aa5.88□□□□□ -1.47
CLN3-205ENST00000359984 MT4P47944 62 aa5.88□□□□□ -1.47
CLN3-205ENST00000359984 KRTAP12-4P60329 112 aa5.83□□□□□ -1.48
CLN3-205ENST00000359984 LCE1DQ5T752 114 aa5.82□□□□□ -1.48
CLN3-205ENST00000359984 KRTAP4-6Q9BYQ5 205 aa5.81□□□□□ -1.48
CLN3-205ENST00000359984 KRTAP9-4Q9BYQ2 154 aa5.76□□□□□ -1.49
CLN3-205ENST00000359984 HMCN1Q96RW7 5635 aa5.71□□□□□ -1.49
CLN3-205ENST00000359984 KRTAP20-2Q3LI61 65 aa5.68□□□□□ -1.5
CLN3-205ENST00000359984 KRTAP6-2Q3LI66 62 aa5.56□□□□□ -1.52
CLN3-205ENST00000359984 KRTAP5-3Q6L8H2 238 aa5.48□□□□□ -1.53
CLN3-205ENST00000359984 MT3P25713 68 aa5.47□□□□□ -1.53
CLN3-205ENST00000359984 KRTAP5-2Q701N4 177 aa5.45□□□□□ -1.54
CLN3-205ENST00000359984 AHNAK2Q8IVF2 5795 aa5.16□□□□□ -1.58
CLN3-205ENST00000359984 LCE3DQ9BYE3 92 aa5.11□□□□□ -1.59
CLN3-205ENST00000359984 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
CLN3-205ENST00000359984 KRTAP4-11Q9BYQ6 195 aa4.98□□□□□ -1.61
CLN3-205ENST00000359984 LCE3EQ5T5B0 92 aa4.96□□□□□ -1.61
CLN3-205ENST00000359984 KRTAP5-10Q6L8G5 202 aa4.96□□□□□ -1.61
CLN3-205ENST00000359984 GPR98Q8WXG9 6306 aa4.89□□□□□ -1.63
CLN3-205ENST00000359984 LCE1EQ5T753 118 aa4.81□□□□□ -1.64
CLN3-205ENST00000359984 KRTAP5-8O75690 187 aa4.8□□□□□ -1.64
CLN3-205ENST00000359984 KRTAP5-1Q6L8H4 278 aa4.76□□□□□ -1.65
CLN3-205ENST00000359984 KRTAP5-7Q6L8G8 165 aa4.63□□□□□ -1.67
CLN3-205ENST00000359984 MUC5ACP98088 5654 aa4.57□□□□□ -1.68
CLN3-205ENST00000359984 LCE1BQ5T7P3 118 aa4.52□□□□□ -1.69
CLN3-205ENST00000359984 KRTAP4-2Q9BYR5 136 aa4.52□□□□□ -1.69
CLN3-205ENST00000359984 PRM1P04553 51 aa4.49□□□□□ -1.69
CLN3-205ENST00000359984 LCE1CQ5T751 118 aa4.48□□□□□ -1.69
CLN3-205ENST00000359984 KRTAP9-9Q9BYP9 154 aa4.37□□□□□ -1.71
CLN3-205ENST00000359984 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.17□□□□□ -1.74
CLN3-205ENST00000359984 MUC5BQ9HC84 5762 aaPredicted RBP4.16□□□□□ -1.74
CLN3-205ENST00000359984 AHNAKQ09666 5890 aaKnown RBP3.98□□□□□ -1.77
CLN3-205ENST00000359984 KRTAP5-11Q6L8G4 156 aa3.98□□□□□ -1.77
CLN3-205ENST00000359984 KRTAP21-2Q3LI59 83 aa3.93□□□□□ -1.78
CLN3-205ENST00000359984 KRTAP4-12Q9BQ66 201 aa3.83□□□□□ -1.8
CLN3-205ENST00000359984 LCE1FQ5T754 118 aa3.64□□□□□ -1.83
CLN3-205ENST00000359984 KRTAP4-4Q9BYR3 166 aa3.52□□□□□ -1.85
CLN3-205ENST00000359984 PHGR1C9JFL3 82 aa3.42□□□□□ -1.86
CLN3-205ENST00000359984 MUC19Q7Z5P9 8384 aa3.06□□□□□ -1.92
CLN3-205ENST00000359984 KRTAP21-1Q3LI58 79 aa2.94□□□□□ -1.94
CLN3-205ENST00000359984 MUC16Q8WXI7 14507 aa2.2□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 145 ms