RNA–Protein interactions for RNA: ENST00000358966.6

GGPS1-202, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene GGPS1, Length 2,740 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-202ENST00000358966 MT1LQ93083 61 aa4.45□□□□□ -1.7
GGPS1-202ENST00000358966 LCE3CQ5T5A8 94 aa4.44□□□□□ -1.7
GGPS1-202ENST00000358966 DSTQ03001 7570 aaKnown RBP4.43□□□□□ -1.7
GGPS1-202ENST00000358966 SPRR2FQ96RM1 72 aa4.41□□□□□ -1.7
GGPS1-202ENST00000358966 MDN1Q9NU22 5596 aa4.41□□□□□ -1.7
GGPS1-202ENST00000358966 KRTAP4-3Q9BYR4 195 aa4.37□□□□□ -1.71
GGPS1-202ENST00000358966 KRTAP9-6A8MVA2 160 aa4.36□□□□□ -1.71
GGPS1-202ENST00000358966 KRTAP19-3Q7Z4W3 81 aa4.29□□□□□ -1.72
GGPS1-202ENST00000358966 MT1MQ8N339 61 aa4.25□□□□□ -1.73
GGPS1-202ENST00000358966 LOC100996750A0A140TA64 210 aa4.24□□□□□ -1.73
GGPS1-202ENST00000358966 KRTAP2-3P0C7H8 128 aa4.23□□□□□ -1.73
GGPS1-202ENST00000358966 KRTAP2-4Q9BYR9 128 aa4.23□□□□□ -1.73
GGPS1-202ENST00000358966 KRTAP2-1Q9BYU5 128 aa4.23□□□□□ -1.73
GGPS1-202ENST00000358966 KRTAP9-6A0A140TA67 174 aa4.21□□□□□ -1.74
GGPS1-202ENST00000358966 MT1GP13640 62 aa4.21□□□□□ -1.74
GGPS1-202ENST00000358966 LCE5AQ5TCM9 118 aa4.2□□□□□ -1.74
GGPS1-202ENST00000358966 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.18□□□□□ -1.74
GGPS1-202ENST00000358966 KRTAP5-9P26371 169 aa4.17□□□□□ -1.74
GGPS1-202ENST00000358966 LCE1AQ5T7P2 110 aa4.15□□□□□ -1.75
GGPS1-202ENST00000358966 SPRR2EP22531 72 aa4.11□□□□□ -1.75
GGPS1-202ENST00000358966 SPRR2BP35325 72 aa4.11□□□□□ -1.75
GGPS1-202ENST00000358966 SPRR2AP35326 72 aa4.11□□□□□ -1.75
GGPS1-202ENST00000358966 KRTAP19-4Q3LI73 84 aa4.08□□□□□ -1.76
GGPS1-202ENST00000358966 KRTAP6-3Q3LI67 103 aa4□□□□□ -1.77
GGPS1-202ENST00000358966 KRTAP12-4P60329 112 aa3.98□□□□□ -1.77
GGPS1-202ENST00000358966 SYNE1Q8NF91 8797 aaKnown RBP3.97□□□□□ -1.77
GGPS1-202ENST00000358966 SPRR2DP22532 72 aa3.93□□□□□ -1.78
GGPS1-202ENST00000358966 KRTAP9-7A8MTY7 169 aa3.9□□□□□ -1.78
GGPS1-202ENST00000358966 NEBP20929 6669 aa3.84□□□□□ -1.79
GGPS1-202ENST00000358966 KRTAP2-2Q9BYT5 123 aa3.82□□□□□ -1.8
GGPS1-202ENST00000358966 KRTAP6-1Q3LI64 71 aa3.81□□□□□ -1.8
GGPS1-202ENST00000358966 LCE3BQ5TA77 95 aa3.79□□□□□ -1.8
GGPS1-202ENST00000358966 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
GGPS1-202ENST00000358966 OBSCNQ5VST9 7968 aa3.72□□□□□ -1.81
GGPS1-202ENST00000358966 MT1AP04731 61 aa3.71□□□□□ -1.82
GGPS1-202ENST00000358966 KRTAP4-9Q9BYQ8 210 aa3.7□□□□□ -1.82
GGPS1-202ENST00000358966 PRM1P04553 51 aa3.62□□□□□ -1.83
GGPS1-202ENST00000358966 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
GGPS1-202ENST00000358966 KRTAP4-6Q9BYQ5 205 aa3.57□□□□□ -1.84
GGPS1-202ENST00000358966 MT4P47944 62 aa3.53□□□□□ -1.84
GGPS1-202ENST00000358966 KRTAP9-4Q9BYQ2 154 aa3.52□□□□□ -1.85
GGPS1-202ENST00000358966 KRTAP5-4Q6L8H1 288 aa3.5□□□□□ -1.85
GGPS1-202ENST00000358966 KRTAP6-2Q3LI66 62 aa3.49□□□□□ -1.85
GGPS1-202ENST00000358966 HMCN1Q96RW7 5635 aa3.46□□□□□ -1.86
GGPS1-202ENST00000358966 LCE1DQ5T752 114 aa3.43□□□□□ -1.86
GGPS1-202ENST00000358966 KRTAP20-1Q3LI63 56 aa3.42□□□□□ -1.86
GGPS1-202ENST00000358966 LCE3EQ5T5B0 92 aa3.38□□□□□ -1.87
GGPS1-202ENST00000358966 LCE3DQ9BYE3 92 aa3.36□□□□□ -1.87
GGPS1-202ENST00000358966 MT3P25713 68 aa3.34□□□□□ -1.87
GGPS1-202ENST00000358966 LCE4AQ5TA78 99 aa3.34□□□□□ -1.87
GGPS1-202ENST00000358966 KRTAP20-2Q3LI61 65 aa3.34□□□□□ -1.88
GGPS1-202ENST00000358966 KRTAP5-2Q701N4 177 aa3.2□□□□□ -1.9
GGPS1-202ENST00000358966 KRTAP5-3Q6L8H2 238 aa3.18□□□□□ -1.9
GGPS1-202ENST00000358966 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
GGPS1-202ENST00000358966 KRTAP4-12Q9BQ66 201 aa3.11□□□□□ -1.91
GGPS1-202ENST00000358966 KRTAP9-9Q9BYP9 154 aa3.09□□□□□ -1.91
GGPS1-202ENST00000358966 AHNAK2Q8IVF2 5795 aa2.89□□□□□ -1.95
GGPS1-202ENST00000358966 MUC5ACP98088 5654 aa2.88□□□□□ -1.95
GGPS1-202ENST00000358966 KRTAP4-11Q9BYQ6 195 aa2.86□□□□□ -1.95
GGPS1-202ENST00000358966 LCE1BQ5T7P3 118 aa2.86□□□□□ -1.95
GGPS1-202ENST00000358966 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
GGPS1-202ENST00000358966 KRTAP4-2Q9BYR5 136 aa2.8□□□□□ -1.96
GGPS1-202ENST00000358966 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
GGPS1-202ENST00000358966 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.98
GGPS1-202ENST00000358966 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
GGPS1-202ENST00000358966 LCE1CQ5T751 118 aa2.65□□□□□ -1.98
GGPS1-202ENST00000358966 MUC5BQ9HC84 5762 aaPredicted RBP2.6□□□□□ -1.99
GGPS1-202ENST00000358966 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
GGPS1-202ENST00000358966 KRTAP5-7Q6L8G8 165 aa2.56□□□□□ -2
GGPS1-202ENST00000358966 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.02
GGPS1-202ENST00000358966 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.45□□□□□ -2.02
GGPS1-202ENST00000358966 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
GGPS1-202ENST00000358966 KRTAP5-11Q6L8G4 156 aa2.33□□□□□ -2.04
GGPS1-202ENST00000358966 KRTAP21-1Q3LI58 79 aa2.31□□□□□ -2.04
GGPS1-202ENST00000358966 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.08
GGPS1-202ENST00000358966 PHGR1C9JFL3 82 aa2.03□□□□□ -2.09
GGPS1-202ENST00000358966 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 231.8 ms