RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 MT1XP80297 61 aa2.53□□□□□ -2
CSDE1-203ENST00000358528 INE1O15225 51 aa2.53□□□□□ -2
CSDE1-203ENST00000358528 MT1BP07438 61 aa2.52□□□□□ -2.01
CSDE1-203ENST00000358528 KRTAP19-8Q3LI54 63 aa2.49□□□□□ -2.01
CSDE1-203ENST00000358528 KRTAP19-5Q3LI72 72 aa2.48□□□□□ -2.01
CSDE1-203ENST00000358528 KMT2DO14686 5537 aa2.42□□□□□ -2.02
CSDE1-203ENST00000358528 LCE3CQ5T5A8 94 aa2.42□□□□□ -2.02
CSDE1-203ENST00000358528 USH2AO75445 5202 aa2.42□□□□□ -2.02
CSDE1-203ENST00000358528 CRCT1Q9UGL9 99 aa2.4□□□□□ -2.03
CSDE1-203ENST00000358528 FSIP2Q5CZC0 6907 aa2.38□□□□□ -2.03
CSDE1-203ENST00000358528 SSPOA2VEC9 5147 aa2.34□□□□□ -2.04
CSDE1-203ENST00000358528 KRTAP9-6A8MVA2 160 aa2.29□□□□□ -2.04
CSDE1-203ENST00000358528 KRTAP19-7Q3SYF9 63 aa2.23□□□□□ -2.05
CSDE1-203ENST00000358528 SYNE1Q8NF91 8797 aaKnown RBP2.22□□□□□ -2.05
CSDE1-203ENST00000358528 DSTQ03001 7570 aaKnown RBP2.22□□□□□ -2.05
CSDE1-203ENST00000358528 MT1GP13640 62 aa2.22□□□□□ -2.05
CSDE1-203ENST00000358528 MT1LQ93083 61 aa2.21□□□□□ -2.06
CSDE1-203ENST00000358528 KRTAP4-3Q9BYR4 195 aa2.2□□□□□ -2.06
CSDE1-203ENST00000358528 OBSCNQ5VST9 7968 aa2.2□□□□□ -2.06
CSDE1-203ENST00000358528 FCGBPQ9Y6R7 5405 aaPredicted RBP2.19□□□□□ -2.06
CSDE1-203ENST00000358528 MT1EP04732 61 aa2.19□□□□□ -2.06
CSDE1-203ENST00000358528 KRTAP2-3P0C7H8 128 aa2.16□□□□□ -2.06
CSDE1-203ENST00000358528 KRTAP2-4Q9BYR9 128 aa2.16□□□□□ -2.06
CSDE1-203ENST00000358528 KRTAP2-1Q9BYU5 128 aa2.16□□□□□ -2.06
CSDE1-203ENST00000358528 KRTAP12-4P60329 112 aa2.15□□□□□ -2.07
CSDE1-203ENST00000358528 MUC12Q9UKN1 5478 aa2.13□□□□□ -2.07
CSDE1-203ENST00000358528 SPRR2FQ96RM1 72 aa2.12□□□□□ -2.07
CSDE1-203ENST00000358528 MT1MQ8N339 61 aa2.07□□□□□ -2.08
CSDE1-203ENST00000358528 KRTAP19-3Q7Z4W3 81 aa2.06□□□□□ -2.08
CSDE1-203ENST00000358528 GPR98Q8WXG9 6306 aa2.06□□□□□ -2.08
CSDE1-203ENST00000358528 SYNE2Q8WXH0 6885 aaKnown RBP2.05□□□□□ -2.08
CSDE1-203ENST00000358528 KRTAP19-6Q3LI70 58 aa2.01□□□□□ -2.09
CSDE1-203ENST00000358528 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.99□□□□□ -2.09
CSDE1-203ENST00000358528 LCE3DQ9BYE3 92 aa1.96□□□□□ -2.1
CSDE1-203ENST00000358528 NEBP20929 6669 aa1.94□□□□□ -2.1
CSDE1-203ENST00000358528 LCE3EQ5T5B0 92 aa1.92□□□□□ -2.1
CSDE1-203ENST00000358528 PRM1P04553 51 aa1.91□□□□□ -2.1
CSDE1-203ENST00000358528 KRTAP6-1Q3LI64 71 aa1.91□□□□□ -2.1
CSDE1-203ENST00000358528 MACF1Q9UPN3 7388 aaKnown RBP1.91□□□□□ -2.1
CSDE1-203ENST00000358528 SPRR2EP22531 72 aa1.88□□□□□ -2.11
CSDE1-203ENST00000358528 SPRR2BP35325 72 aa1.88□□□□□ -2.11
CSDE1-203ENST00000358528 SPRR2AP35326 72 aa1.88□□□□□ -2.11
CSDE1-203ENST00000358528 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
CSDE1-203ENST00000358528 MUC5BQ9HC84 5762 aaPredicted RBP1.85□□□□□ -2.11
CSDE1-203ENST00000358528 KRTAP6-3Q3LI67 103 aa1.85□□□□□ -2.11
CSDE1-203ENST00000358528 MDN1Q9NU22 5596 aa1.84□□□□□ -2.11
CSDE1-203ENST00000358528 MT1AP04731 61 aa1.84□□□□□ -2.11
CSDE1-203ENST00000358528 MUC19Q7Z5P9 8384 aa1.79□□□□□ -2.12
CSDE1-203ENST00000358528 SPRR2DP22532 72 aa1.79□□□□□ -2.12
CSDE1-203ENST00000358528 LCE1AQ5T7P2 110 aa1.79□□□□□ -2.12
CSDE1-203ENST00000358528 KRTAP5-9P26371 169 aa1.79□□□□□ -2.12
CSDE1-203ENST00000358528 KRTAP6-2Q3LI66 62 aa1.78□□□□□ -2.12
CSDE1-203ENST00000358528 LCE1EQ5T753 118 aa1.76□□□□□ -2.13
CSDE1-203ENST00000358528 KRTAP5-5Q701N2 237 aaPredicted RBP1.74□□□□□ -2.13
CSDE1-203ENST00000358528 MT3P25713 68 aa1.73□□□□□ -2.13
CSDE1-203ENST00000358528 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
CSDE1-203ENST00000358528 KRTAP5-10Q6L8G5 202 aa1.7□□□□□ -2.14
CSDE1-203ENST00000358528 KRTAP2-2Q9BYT5 123 aa1.69□□□□□ -2.14
CSDE1-203ENST00000358528 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
CSDE1-203ENST00000358528 MT4P47944 62 aa1.67□□□□□ -2.14
CSDE1-203ENST00000358528 KRTAP5-1Q6L8H4 278 aa1.66□□□□□ -2.14
CSDE1-203ENST00000358528 KRTAP5-4Q6L8H1 288 aa1.66□□□□□ -2.14
CSDE1-203ENST00000358528 AHNAK2Q8IVF2 5795 aa1.64□□□□□ -2.15
CSDE1-203ENST00000358528 KRTAP20-1Q3LI63 56 aa1.64□□□□□ -2.15
CSDE1-203ENST00000358528 KRTAP4-4Q9BYR3 166 aa1.62□□□□□ -2.15
CSDE1-203ENST00000358528 LCE1BQ5T7P3 118 aa1.56□□□□□ -2.16
CSDE1-203ENST00000358528 HMCN1Q96RW7 5635 aa1.55□□□□□ -2.16
CSDE1-203ENST00000358528 LCE1FQ5T754 118 aa1.45□□□□□ -2.18
CSDE1-203ENST00000358528 MUC5ACP98088 5654 aa1.45□□□□□ -2.18
CSDE1-203ENST00000358528 KRTAP20-2Q3LI61 65 aa1.44□□□□□ -2.18
CSDE1-203ENST00000358528 KRTAP5-2Q701N4 177 aa1.4□□□□□ -2.19
CSDE1-203ENST00000358528 KRTAP5-8O75690 187 aa1.22□□□□□ -2.21
CSDE1-203ENST00000358528 LCE1CQ5T751 118 aa1.21□□□□□ -2.22
CSDE1-203ENST00000358528 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
CSDE1-203ENST00000358528 KRTAP21-1Q3LI58 79 aa1.06□□□□□ -2.24
CSDE1-203ENST00000358528 PHGR1C9JFL3 82 aa0.88□□□□□ -2.27
CSDE1-203ENST00000358528 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 7 ms