RNA–Protein interactions for RNA: ENST00000357348.9

RTFDC1-202, Transcript of Protein RTF2 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTFDC1, Length 2,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-202ENST00000357348 LCE3BQ5TA77 95 aa4.77□□□□□ -1.65
RTFDC1-202ENST00000357348 KRTAP9-9Q9BYP9 154 aa4.68□□□□□ -1.66
RTFDC1-202ENST00000357348 KRTAP9-4Q9BYQ2 154 aa4.68□□□□□ -1.66
RTFDC1-202ENST00000357348 KRTAP19-5Q3LI72 72 aa4.62□□□□□ -1.67
RTFDC1-202ENST00000357348 MUC12Q9UKN1 5478 aa4.61□□□□□ -1.67
RTFDC1-202ENST00000357348 LCE3CQ5T5A8 94 aa4.6□□□□□ -1.67
RTFDC1-202ENST00000357348 KRTAP19-7Q3SYF9 63 aa4.57□□□□□ -1.68
RTFDC1-202ENST00000357348 SPRR2FQ96RM1 72 aa4.54□□□□□ -1.68
RTFDC1-202ENST00000357348 MDN1Q9NU22 5596 aa4.48□□□□□ -1.69
RTFDC1-202ENST00000357348 MT1EP04732 61 aa4.48□□□□□ -1.69
RTFDC1-202ENST00000357348 LCE1DQ5T752 114 aa4.47□□□□□ -1.69
RTFDC1-202ENST00000357348 KRTAP9-6A8MVA2 160 aa4.45□□□□□ -1.7
RTFDC1-202ENST00000357348 KRTAP2-3P0C7H8 128 aa4.43□□□□□ -1.7
RTFDC1-202ENST00000357348 KRTAP2-4Q9BYR9 128 aa4.43□□□□□ -1.7
RTFDC1-202ENST00000357348 KRTAP2-1Q9BYU5 128 aa4.43□□□□□ -1.7
RTFDC1-202ENST00000357348 KRTAP5-9P26371 169 aa4.42□□□□□ -1.7
RTFDC1-202ENST00000357348 LCE4AQ5TA78 99 aa4.42□□□□□ -1.7
RTFDC1-202ENST00000357348 KRTAP4-7Q9BYR0 210 aa4.42□□□□□ -1.7
RTFDC1-202ENST00000357348 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
RTFDC1-202ENST00000357348 KRTAP9-7A8MTY7 169 aa4.4□□□□□ -1.71
RTFDC1-202ENST00000357348 KRTAP6-3Q3LI67 103 aa4.4□□□□□ -1.71
RTFDC1-202ENST00000357348 MT1LQ93083 61 aa4.37□□□□□ -1.71
RTFDC1-202ENST00000357348 KRTAP4-9Q9BYQ8 210 aa4.34□□□□□ -1.71
RTFDC1-202ENST00000357348 KRTAP19-3Q7Z4W3 81 aa4.33□□□□□ -1.72
RTFDC1-202ENST00000357348 SPRR2EP22531 72 aa4.32□□□□□ -1.72
RTFDC1-202ENST00000357348 SPRR2BP35325 72 aa4.32□□□□□ -1.72
RTFDC1-202ENST00000357348 SPRR2AP35326 72 aa4.32□□□□□ -1.72
RTFDC1-202ENST00000357348 DSTQ03001 7570 aaKnown RBP4.3□□□□□ -1.72
RTFDC1-202ENST00000357348 LCE1AQ5T7P2 110 aa4.3□□□□□ -1.72
RTFDC1-202ENST00000357348 MT1GP13640 62 aa4.25□□□□□ -1.73
RTFDC1-202ENST00000357348 LCE5AQ5TCM9 118 aa4.25□□□□□ -1.73
RTFDC1-202ENST00000357348 KRTAP4-3Q9BYR4 195 aa4.25□□□□□ -1.73
RTFDC1-202ENST00000357348 MT1MQ8N339 61 aa4.23□□□□□ -1.73
RTFDC1-202ENST00000357348 KRTAP4-2Q9BYR5 136 aa4.23□□□□□ -1.73
RTFDC1-202ENST00000357348 KRTAP4-11Q9BYQ6 195 aa4.19□□□□□ -1.74
RTFDC1-202ENST00000357348 NEBP20929 6669 aa4.19□□□□□ -1.74
RTFDC1-202ENST00000357348 SPRR2DP22532 72 aa4.15□□□□□ -1.74
RTFDC1-202ENST00000357348 KRTAP12-4P60329 112 aa3.87□□□□□ -1.79
RTFDC1-202ENST00000357348 KRTAP20-1Q3LI63 56 aa3.87□□□□□ -1.79
RTFDC1-202ENST00000357348 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
RTFDC1-202ENST00000357348 KRTAP2-2Q9BYT5 123 aa3.79□□□□□ -1.8
RTFDC1-202ENST00000357348 SYNE1Q8NF91 8797 aaKnown RBP3.78□□□□□ -1.8
RTFDC1-202ENST00000357348 MT1AP04731 61 aa3.72□□□□□ -1.81
RTFDC1-202ENST00000357348 KRTAP6-1Q3LI64 71 aa3.72□□□□□ -1.81
RTFDC1-202ENST00000357348 KRTAP5-3Q6L8H2 238 aa3.71□□□□□ -1.82
RTFDC1-202ENST00000357348 MT4P47944 62 aa3.67□□□□□ -1.82
RTFDC1-202ENST00000357348 KRTAP5-4Q6L8H1 288 aa3.65□□□□□ -1.83
RTFDC1-202ENST00000357348 HMCN1Q96RW7 5635 aa3.57□□□□□ -1.84
RTFDC1-202ENST00000357348 LCE3DQ9BYE3 92 aa3.56□□□□□ -1.84
RTFDC1-202ENST00000357348 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
RTFDC1-202ENST00000357348 KRTAP20-2Q3LI61 65 aa3.47□□□□□ -1.85
RTFDC1-202ENST00000357348 OBSCNQ5VST9 7968 aa3.46□□□□□ -1.86
RTFDC1-202ENST00000357348 KRTAP6-2Q3LI66 62 aa3.46□□□□□ -1.86
RTFDC1-202ENST00000357348 PRM1P04553 51 aa3.45□□□□□ -1.86
RTFDC1-202ENST00000357348 MT3P25713 68 aa3.35□□□□□ -1.87
RTFDC1-202ENST00000357348 KRTAP5-2Q701N4 177 aa3.29□□□□□ -1.88
RTFDC1-202ENST00000357348 AHNAK2Q8IVF2 5795 aa3.16□□□□□ -1.9
RTFDC1-202ENST00000357348 LCE1FQ5T754 118 aa3.08□□□□□ -1.92
RTFDC1-202ENST00000357348 LCE1EQ5T753 118 aa3□□□□□ -1.93
RTFDC1-202ENST00000357348 KRTAP5-10Q6L8G5 202 aa2.99□□□□□ -1.93
RTFDC1-202ENST00000357348 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
RTFDC1-202ENST00000357348 KRTAP5-8O75690 187 aa2.92□□□□□ -1.94
RTFDC1-202ENST00000357348 KRTAP5-1Q6L8H4 278 aa2.9□□□□□ -1.95
RTFDC1-202ENST00000357348 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
RTFDC1-202ENST00000357348 KRTAP5-11Q6L8G4 156 aa2.83□□□□□ -1.96
RTFDC1-202ENST00000357348 MUC5ACP98088 5654 aa2.83□□□□□ -1.96
RTFDC1-202ENST00000357348 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.81□□□□□ -1.96
RTFDC1-202ENST00000357348 KRTAP5-7Q6L8G8 165 aa2.74□□□□□ -1.97
RTFDC1-202ENST00000357348 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
RTFDC1-202ENST00000357348 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
RTFDC1-202ENST00000357348 KRTAP21-2Q3LI59 83 aa2.41□□□□□ -2.02
RTFDC1-202ENST00000357348 AHNAKQ09666 5890 aaKnown RBP2.39□□□□□ -2.03
RTFDC1-202ENST00000357348 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.03
RTFDC1-202ENST00000357348 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
RTFDC1-202ENST00000357348 PHGR1C9JFL3 82 aa2.07□□□□□ -2.08
RTFDC1-202ENST00000357348 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
RTFDC1-202ENST00000357348 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 172.7 ms