RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 SYNE2Q8WXH0 6885 aaKnown RBP3.12□□□□□ -1.91
TRIM55-204ENST00000353317 LCE3CQ5T5A8 94 aa3.12□□□□□ -1.91
TRIM55-204ENST00000353317 KRTAP6-3Q3LI67 103 aa3.11□□□□□ -1.91
TRIM55-204ENST00000353317 MUC12Q9UKN1 5478 aa3.11□□□□□ -1.91
TRIM55-204ENST00000353317 KRTAP20-1Q3LI63 56 aa3.1□□□□□ -1.91
TRIM55-204ENST00000353317 KRTAP9-6A8MVA2 160 aa3.05□□□□□ -1.92
TRIM55-204ENST00000353317 MT1EP04732 61 aa3.05□□□□□ -1.92
TRIM55-204ENST00000353317 NEBP20929 6669 aa3.02□□□□□ -1.93
TRIM55-204ENST00000353317 KRTAP4-7Q9BYR0 210 aa3□□□□□ -1.93
TRIM55-204ENST00000353317 MT1LQ93083 61 aa2.99□□□□□ -1.93
TRIM55-204ENST00000353317 SPRR2FQ96RM1 72 aa2.98□□□□□ -1.93
TRIM55-204ENST00000353317 MDN1Q9NU22 5596 aa2.97□□□□□ -1.93
TRIM55-204ENST00000353317 KRTAP2-3P0C7H8 128 aa2.94□□□□□ -1.94
TRIM55-204ENST00000353317 KRTAP5-9P26371 169 aa2.94□□□□□ -1.94
TRIM55-204ENST00000353317 KRTAP2-4Q9BYR9 128 aa2.94□□□□□ -1.94
TRIM55-204ENST00000353317 KRTAP2-1Q9BYU5 128 aa2.94□□□□□ -1.94
TRIM55-204ENST00000353317 DSTQ03001 7570 aaKnown RBP2.92□□□□□ -1.94
TRIM55-204ENST00000353317 KRTAP4-3Q9BYR4 195 aa2.92□□□□□ -1.94
TRIM55-204ENST00000353317 KRTAP19-3Q7Z4W3 81 aa2.91□□□□□ -1.94
TRIM55-204ENST00000353317 GPR98Q8WXG9 6306 aa2.91□□□□□ -1.94
TRIM55-204ENST00000353317 LCE5AQ5TCM9 118 aa2.89□□□□□ -1.95
TRIM55-204ENST00000353317 MT1MQ8N339 61 aa2.88□□□□□ -1.95
TRIM55-204ENST00000353317 LCE1AQ5T7P2 110 aa2.87□□□□□ -1.95
TRIM55-204ENST00000353317 KRTAP19-4Q3LI73 84 aa2.87□□□□□ -1.95
TRIM55-204ENST00000353317 MT1GP13640 62 aa2.86□□□□□ -1.95
TRIM55-204ENST00000353317 LOC100996750A0A140TA64 210 aa2.82□□□□□ -1.96
TRIM55-204ENST00000353317 SPRR2EP22531 72 aa2.81□□□□□ -1.96
TRIM55-204ENST00000353317 SPRR2BP35325 72 aa2.81□□□□□ -1.96
TRIM55-204ENST00000353317 SPRR2AP35326 72 aa2.81□□□□□ -1.96
TRIM55-204ENST00000353317 KRTAP4-6Q9BYQ5 205 aa2.78□□□□□ -1.96
TRIM55-204ENST00000353317 KRTAP2-2Q9BYT5 123 aa2.76□□□□□ -1.97
TRIM55-204ENST00000353317 SPRR2DP22532 72 aa2.7□□□□□ -1.98
TRIM55-204ENST00000353317 MUC5BQ9HC84 5762 aaPredicted RBP2.68□□□□□ -1.98
TRIM55-204ENST00000353317 KRTAP12-4P60329 112 aa2.63□□□□□ -1.99
TRIM55-204ENST00000353317 KRTAP5-3Q6L8H2 238 aa2.6□□□□□ -1.99
TRIM55-204ENST00000353317 KRTAP5-5Q701N2 237 aaPredicted RBP2.6□□□□□ -1.99
TRIM55-204ENST00000353317 LCE3BQ5TA77 95 aa2.6□□□□□ -1.99
TRIM55-204ENST00000353317 SYNE1Q8NF91 8797 aaKnown RBP2.57□□□□□ -2
TRIM55-204ENST00000353317 KRTAP6-1Q3LI64 71 aa2.55□□□□□ -2
TRIM55-204ENST00000353317 KRTAP5-7Q6L8G8 165 aa2.55□□□□□ -2
TRIM55-204ENST00000353317 LCE4AQ5TA78 99 aa2.54□□□□□ -2
TRIM55-204ENST00000353317 KRTAP4-9Q9BYQ8 210 aa2.53□□□□□ -2.01
TRIM55-204ENST00000353317 MT1AP04731 61 aa2.51□□□□□ -2.01
TRIM55-204ENST00000353317 AHNAK2Q8IVF2 5795 aa2.49□□□□□ -2.01
TRIM55-204ENST00000353317 KRTAP5-10Q6L8G5 202 aa2.48□□□□□ -2.01
TRIM55-204ENST00000353317 KRTAP5-4Q6L8H1 288 aa2.46□□□□□ -2.02
TRIM55-204ENST00000353317 AHNAKQ09666 5890 aaKnown RBP2.42□□□□□ -2.02
TRIM55-204ENST00000353317 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
TRIM55-204ENST00000353317 KRTAP9-4Q9BYQ2 154 aa2.4□□□□□ -2.03
TRIM55-204ENST00000353317 MT4P47944 62 aa2.39□□□□□ -2.03
TRIM55-204ENST00000353317 KRTAP9-9Q9BYP9 154 aa2.39□□□□□ -2.03
TRIM55-204ENST00000353317 LCE3EQ5T5B0 92 aa2.38□□□□□ -2.03
TRIM55-204ENST00000353317 OBSCNQ5VST9 7968 aa2.36□□□□□ -2.03
TRIM55-204ENST00000353317 LCE1DQ5T752 114 aa2.35□□□□□ -2.03
TRIM55-204ENST00000353317 KRTAP6-2Q3LI66 62 aa2.34□□□□□ -2.03
TRIM55-204ENST00000353317 PRM1P04553 51 aa2.33□□□□□ -2.04
TRIM55-204ENST00000353317 KRTAP20-2Q3LI61 65 aa2.31□□□□□ -2.04
TRIM55-204ENST00000353317 KRTAP4-4Q9BYR3 166 aa2.29□□□□□ -2.04
TRIM55-204ENST00000353317 KRTAP4-12Q9BQ66 201 aa2.25□□□□□ -2.05
TRIM55-204ENST00000353317 MT3P25713 68 aa2.24□□□□□ -2.05
TRIM55-204ENST00000353317 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
TRIM55-204ENST00000353317 MUC5ACP98088 5654 aa2.13□□□□□ -2.07
TRIM55-204ENST00000353317 KRTAP4-11Q9BYQ6 195 aa2□□□□□ -2.09
TRIM55-204ENST00000353317 LCE1FQ5T754 118 aa1.99□□□□□ -2.09
TRIM55-204ENST00000353317 KRTAP5-1Q6L8H4 278 aa1.96□□□□□ -2.1
TRIM55-204ENST00000353317 KRTAP4-2Q9BYR5 136 aa1.96□□□□□ -2.1
TRIM55-204ENST00000353317 KRTAP5-8O75690 187 aa1.94□□□□□ -2.1
TRIM55-204ENST00000353317 LCE1EQ5T753 118 aa1.94□□□□□ -2.1
TRIM55-204ENST00000353317 LCE1BQ5T7P3 118 aa1.88□□□□□ -2.11
TRIM55-204ENST00000353317 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.87□□□□□ -2.11
TRIM55-204ENST00000353317 LCE1CQ5T751 118 aa1.83□□□□□ -2.12
TRIM55-204ENST00000353317 KRTAP21-2Q3LI59 83 aa1.68□□□□□ -2.14
TRIM55-204ENST00000353317 KRTAP5-11Q6L8G4 156 aa1.61□□□□□ -2.15
TRIM55-204ENST00000353317 MUC19Q7Z5P9 8384 aa1.49□□□□□ -2.17
TRIM55-204ENST00000353317 KRTAP21-1Q3LI58 79 aa1.47□□□□□ -2.17
TRIM55-204ENST00000353317 PHGR1C9JFL3 82 aa1.4□□□□□ -2.18
TRIM55-204ENST00000353317 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 28.7 ms