RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.91□□□□□ -1.46
SAMM50-201ENST00000350028 MT1LQ93083 61 aa5.88□□□□□ -1.47
SAMM50-201ENST00000350028 KRTAP4-7Q9BYR0 210 aa5.75□□□□□ -1.49
SAMM50-201ENST00000350028 MUC12Q9UKN1 5478 aa5.72□□□□□ -1.49
SAMM50-201ENST00000350028 KRTAP9-6A8MVA2 160 aa5.71□□□□□ -1.49
SAMM50-201ENST00000350028 KRTAP5-9P26371 169 aa5.68□□□□□ -1.5
SAMM50-201ENST00000350028 KRTAP6-3Q3LI67 103 aa5.66□□□□□ -1.5
SAMM50-201ENST00000350028 KRTAP9-7A8MTY7 169 aa5.64□□□□□ -1.51
SAMM50-201ENST00000350028 KRTAP19-3Q7Z4W3 81 aa5.64□□□□□ -1.51
SAMM50-201ENST00000350028 SPRR2FQ96RM1 72 aa5.64□□□□□ -1.51
SAMM50-201ENST00000350028 MT1GP13640 62 aa5.63□□□□□ -1.51
SAMM50-201ENST00000350028 MDN1Q9NU22 5596 aa5.62□□□□□ -1.51
SAMM50-201ENST00000350028 MT1MQ8N339 61 aa5.57□□□□□ -1.52
SAMM50-201ENST00000350028 KRTAP4-3Q9BYR4 195 aa5.49□□□□□ -1.53
SAMM50-201ENST00000350028 LCE5AQ5TCM9 118 aa5.48□□□□□ -1.53
SAMM50-201ENST00000350028 LCE1AQ5T7P2 110 aa5.47□□□□□ -1.53
SAMM50-201ENST00000350028 KRTAP2-3P0C7H8 128 aa5.46□□□□□ -1.54
SAMM50-201ENST00000350028 KRTAP2-4Q9BYR9 128 aa5.46□□□□□ -1.54
SAMM50-201ENST00000350028 KRTAP2-1Q9BYU5 128 aa5.46□□□□□ -1.54
SAMM50-201ENST00000350028 INE1O15225 51 aa5.43□□□□□ -1.54
SAMM50-201ENST00000350028 NEBP20929 6669 aa5.42□□□□□ -1.54
SAMM50-201ENST00000350028 SPRR2EP22531 72 aa5.4□□□□□ -1.54
SAMM50-201ENST00000350028 SPRR2BP35325 72 aa5.4□□□□□ -1.54
SAMM50-201ENST00000350028 SPRR2AP35326 72 aa5.4□□□□□ -1.54
SAMM50-201ENST00000350028 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
SAMM50-201ENST00000350028 DSTQ03001 7570 aaKnown RBP5.21□□□□□ -1.58
SAMM50-201ENST00000350028 SPRR2DP22532 72 aa5.2□□□□□ -1.58
SAMM50-201ENST00000350028 LCE3BQ5TA77 95 aa5.03□□□□□ -1.6
SAMM50-201ENST00000350028 MT1AP04731 61 aa5□□□□□ -1.61
SAMM50-201ENST00000350028 KRTAP5-5Q701N2 237 aaPredicted RBP4.97□□□□□ -1.61
SAMM50-201ENST00000350028 KRTAP20-1Q3LI63 56 aa4.96□□□□□ -1.62
SAMM50-201ENST00000350028 KRTAP6-1Q3LI64 71 aa4.95□□□□□ -1.62
SAMM50-201ENST00000350028 KRTAP9-4Q9BYQ2 154 aa4.87□□□□□ -1.63
SAMM50-201ENST00000350028 KRTAP2-2Q9BYT5 123 aa4.86□□□□□ -1.63
SAMM50-201ENST00000350028 KRTAP12-4P60329 112 aa4.72□□□□□ -1.65
SAMM50-201ENST00000350028 KRTAP5-4Q6L8H1 288 aa4.71□□□□□ -1.66
SAMM50-201ENST00000350028 KRTAP9-9Q9BYP9 154 aa4.69□□□□□ -1.66
SAMM50-201ENST00000350028 KRTAP4-9Q9BYQ8 210 aa4.69□□□□□ -1.66
SAMM50-201ENST00000350028 SYNE1Q8NF91 8797 aaKnown RBP4.68□□□□□ -1.66
SAMM50-201ENST00000350028 LCE3DQ9BYE3 92 aa4.6□□□□□ -1.67
SAMM50-201ENST00000350028 LCE4AQ5TA78 99 aa4.59□□□□□ -1.67
SAMM50-201ENST00000350028 MT4P47944 62 aa4.55□□□□□ -1.68
SAMM50-201ENST00000350028 HMCN1Q96RW7 5635 aa4.54□□□□□ -1.68
SAMM50-201ENST00000350028 LCE1DQ5T752 114 aa4.54□□□□□ -1.68
SAMM50-201ENST00000350028 KRTAP4-6Q9BYQ5 205 aa4.54□□□□□ -1.68
SAMM50-201ENST00000350028 LCE3EQ5T5B0 92 aa4.52□□□□□ -1.69
SAMM50-201ENST00000350028 MT3P25713 68 aa4.52□□□□□ -1.69
SAMM50-201ENST00000350028 KRTAP6-2Q3LI66 62 aa4.49□□□□□ -1.69
SAMM50-201ENST00000350028 KRTAP20-2Q3LI61 65 aa4.4□□□□□ -1.71
SAMM50-201ENST00000350028 KRTAP5-3Q6L8H2 238 aa4.27□□□□□ -1.73
SAMM50-201ENST00000350028 KRTAP5-2Q701N4 177 aa4.24□□□□□ -1.73
SAMM50-201ENST00000350028 LCE1FQ5T754 118 aa4.21□□□□□ -1.74
SAMM50-201ENST00000350028 KRTAP4-12Q9BQ66 201 aa4.13□□□□□ -1.75
SAMM50-201ENST00000350028 AHNAK2Q8IVF2 5795 aa4.12□□□□□ -1.75
SAMM50-201ENST00000350028 PRM1P04553 51 aa4.1□□□□□ -1.75
SAMM50-201ENST00000350028 OBSCNQ5VST9 7968 aa4.08□□□□□ -1.76
SAMM50-201ENST00000350028 GPR98Q8WXG9 6306 aa3.96□□□□□ -1.78
SAMM50-201ENST00000350028 KRTAP5-10Q6L8G5 202 aa3.92□□□□□ -1.78
SAMM50-201ENST00000350028 KRTAP4-11Q9BYQ6 195 aa3.87□□□□□ -1.79
SAMM50-201ENST00000350028 LCE1EQ5T753 118 aa3.82□□□□□ -1.8
SAMM50-201ENST00000350028 KRTAP5-8O75690 187 aa3.75□□□□□ -1.81
SAMM50-201ENST00000350028 KRTAP5-1Q6L8H4 278 aa3.71□□□□□ -1.82
SAMM50-201ENST00000350028 KRTAP5-7Q6L8G8 165 aa3.64□□□□□ -1.83
SAMM50-201ENST00000350028 MUC5ACP98088 5654 aa3.63□□□□□ -1.83
SAMM50-201ENST00000350028 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
SAMM50-201ENST00000350028 LCE1CQ5T751 118 aa3.56□□□□□ -1.84
SAMM50-201ENST00000350028 KRTAP4-2Q9BYR5 136 aa3.55□□□□□ -1.84
SAMM50-201ENST00000350028 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.36□□□□□ -1.87
SAMM50-201ENST00000350028 MUC5BQ9HC84 5762 aaPredicted RBP3.34□□□□□ -1.88
SAMM50-201ENST00000350028 KRTAP21-2Q3LI59 83 aa3.23□□□□□ -1.89
SAMM50-201ENST00000350028 AHNAKQ09666 5890 aaKnown RBP3.18□□□□□ -1.9
SAMM50-201ENST00000350028 KRTAP5-11Q6L8G4 156 aa3.1□□□□□ -1.91
SAMM50-201ENST00000350028 KRTAP4-4Q9BYR3 166 aa2.85□□□□□ -1.95
SAMM50-201ENST00000350028 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
SAMM50-201ENST00000350028 KRTAP21-1Q3LI58 79 aa2.58□□□□□ -2
SAMM50-201ENST00000350028 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
SAMM50-201ENST00000350028 MUC16Q8WXI7 14507 aa1.81□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 116.9 ms