RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 KRTAP4-3Q9BYR4 195 aa4.85□□□□□ -1.63
TRIM4-201ENST00000349062 KRTAP9-6A8MVA2 160 aa4.84□□□□□ -1.63
TRIM4-201ENST00000349062 MT1LQ93083 61 aa4.82□□□□□ -1.64
TRIM4-201ENST00000349062 SPRR2FQ96RM1 72 aa4.79□□□□□ -1.64
TRIM4-201ENST00000349062 LOC100996750A0A140TA64 210 aa4.76□□□□□ -1.65
TRIM4-201ENST00000349062 LCE2DQ5TA82 110 aaPredicted RBP4.71□□□□□ -1.65
TRIM4-201ENST00000349062 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.65
TRIM4-201ENST00000349062 MT1GP13640 62 aa4.7□□□□□ -1.66
TRIM4-201ENST00000349062 KRTAP9-2Q9BYQ4 174 aa4.69□□□□□ -1.66
TRIM4-201ENST00000349062 MDN1Q9NU22 5596 aa4.65□□□□□ -1.66
TRIM4-201ENST00000349062 OBSCNQ5VST9 7968 aa4.61□□□□□ -1.67
TRIM4-201ENST00000349062 KRTAP19-3Q7Z4W3 81 aa4.6□□□□□ -1.67
TRIM4-201ENST00000349062 MT1MQ8N339 61 aa4.57□□□□□ -1.68
TRIM4-201ENST00000349062 KRTAP2-3P0C7H8 128 aa4.51□□□□□ -1.69
TRIM4-201ENST00000349062 KRTAP2-4Q9BYR9 128 aa4.51□□□□□ -1.69
TRIM4-201ENST00000349062 KRTAP2-1Q9BYU5 128 aa4.51□□□□□ -1.69
TRIM4-201ENST00000349062 LCE5AQ5TCM9 118 aa4.4□□□□□ -1.71
TRIM4-201ENST00000349062 SPRR2EP22531 72 aa4.39□□□□□ -1.71
TRIM4-201ENST00000349062 SPRR2BP35325 72 aa4.39□□□□□ -1.71
TRIM4-201ENST00000349062 SPRR2AP35326 72 aa4.39□□□□□ -1.71
TRIM4-201ENST00000349062 LCE3BQ5TA77 95 aa4.35□□□□□ -1.71
TRIM4-201ENST00000349062 KRTAP12-4P60329 112 aa4.35□□□□□ -1.71
TRIM4-201ENST00000349062 KRTAP19-4Q3LI73 84 aa4.31□□□□□ -1.72
TRIM4-201ENST00000349062 LCE1AQ5T7P2 110 aa4.3□□□□□ -1.72
TRIM4-201ENST00000349062 KRTAP4-9Q9BYQ8 210 aa4.27□□□□□ -1.73
TRIM4-201ENST00000349062 SPRR2DP22532 72 aa4.18□□□□□ -1.74
TRIM4-201ENST00000349062 KRTAP6-1Q3LI64 71 aa4.18□□□□□ -1.74
TRIM4-201ENST00000349062 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.16□□□□□ -1.74
TRIM4-201ENST00000349062 KRTAP5-9P26371 169 aa4.14□□□□□ -1.75
TRIM4-201ENST00000349062 KRTAP9-6A0A140TA67 174 aa4.11□□□□□ -1.75
TRIM4-201ENST00000349062 MT1AP04731 61 aa4□□□□□ -1.77
TRIM4-201ENST00000349062 KRTAP6-3Q3LI67 103 aa3.97□□□□□ -1.77
TRIM4-201ENST00000349062 KRTAP9-7A8MTY7 169 aa3.9□□□□□ -1.78
TRIM4-201ENST00000349062 LCE3DQ9BYE3 92 aa3.9□□□□□ -1.79
TRIM4-201ENST00000349062 PRM1P04553 51 aa3.88□□□□□ -1.79
TRIM4-201ENST00000349062 KRTAP5-5Q701N2 237 aaPredicted RBP3.88□□□□□ -1.79
TRIM4-201ENST00000349062 MT4P47944 62 aa3.85□□□□□ -1.79
TRIM4-201ENST00000349062 KRTAP6-2Q3LI66 62 aa3.83□□□□□ -1.8
TRIM4-201ENST00000349062 LCE3EQ5T5B0 92 aa3.83□□□□□ -1.8
TRIM4-201ENST00000349062 NEBP20929 6669 aa3.81□□□□□ -1.8
TRIM4-201ENST00000349062 KRTAP9-4Q9BYQ2 154 aa3.79□□□□□ -1.8
TRIM4-201ENST00000349062 KRTAP4-6Q9BYQ5 205 aa3.72□□□□□ -1.81
TRIM4-201ENST00000349062 MT3P25713 68 aa3.66□□□□□ -1.82
TRIM4-201ENST00000349062 HMCN1Q96RW7 5635 aa3.57□□□□□ -1.84
TRIM4-201ENST00000349062 LCE1DQ5T752 114 aa3.49□□□□□ -1.85
TRIM4-201ENST00000349062 KRTAP5-4Q6L8H1 288 aa3.48□□□□□ -1.85
TRIM4-201ENST00000349062 KRTAP20-2Q3LI61 65 aa3.46□□□□□ -1.86
TRIM4-201ENST00000349062 KRTAP2-2Q9BYT5 123 aa3.43□□□□□ -1.86
TRIM4-201ENST00000349062 KRTAP20-1Q3LI63 56 aa3.41□□□□□ -1.86
TRIM4-201ENST00000349062 LCE4AQ5TA78 99 aa3.39□□□□□ -1.87
TRIM4-201ENST00000349062 LCE1BQ5T7P3 118 aa3.29□□□□□ -1.88
TRIM4-201ENST00000349062 MUC19Q7Z5P9 8384 aa3.27□□□□□ -1.89
TRIM4-201ENST00000349062 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
TRIM4-201ENST00000349062 KRTAP5-2Q701N4 177 aa3.19□□□□□ -1.9
TRIM4-201ENST00000349062 KRTAP5-3Q6L8H2 238 aa3.18□□□□□ -1.9
TRIM4-201ENST00000349062 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
TRIM4-201ENST00000349062 KRTAP4-11Q9BYQ6 195 aa2.98□□□□□ -1.93
TRIM4-201ENST00000349062 AHNAK2Q8IVF2 5795 aa2.92□□□□□ -1.94
TRIM4-201ENST00000349062 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
TRIM4-201ENST00000349062 KRTAP4-2Q9BYR5 136 aa2.84□□□□□ -1.95
TRIM4-201ENST00000349062 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
TRIM4-201ENST00000349062 LCE1FQ5T754 118 aa2.77□□□□□ -1.97
TRIM4-201ENST00000349062 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
TRIM4-201ENST00000349062 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
TRIM4-201ENST00000349062 KRTAP5-10Q6L8G5 202 aa2.74□□□□□ -1.97
TRIM4-201ENST00000349062 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
TRIM4-201ENST00000349062 KRTAP4-12Q9BQ66 201 aa2.7□□□□□ -1.98
TRIM4-201ENST00000349062 GPR98Q8WXG9 6306 aa2.67□□□□□ -1.98
TRIM4-201ENST00000349062 KRTAP21-2Q3LI59 83 aa2.59□□□□□ -1.99
TRIM4-201ENST00000349062 KRTAP9-9Q9BYP9 154 aa2.59□□□□□ -1.99
TRIM4-201ENST00000349062 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
TRIM4-201ENST00000349062 KRTAP5-7Q6L8G8 165 aa2.43□□□□□ -2.02
TRIM4-201ENST00000349062 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
TRIM4-201ENST00000349062 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
TRIM4-201ENST00000349062 AHNAKQ09666 5890 aaKnown RBP2.19□□□□□ -2.06
TRIM4-201ENST00000349062 PHGR1C9JFL3 82 aa2.07□□□□□ -2.08
TRIM4-201ENST00000349062 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 181.4 ms