RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 KRTAP19-5Q3LI72 72 aa4.77□□□□□ -1.65
CLK3-201ENST00000345005 MUC12Q9UKN1 5478 aa4.74□□□□□ -1.65
CLK3-201ENST00000345005 NEBP20929 6669 aa4.71□□□□□ -1.66
CLK3-201ENST00000345005 KRTAP19-7Q3SYF9 63 aa4.67□□□□□ -1.66
CLK3-201ENST00000345005 KMT2DO14686 5537 aa4.67□□□□□ -1.66
CLK3-201ENST00000345005 KRTAP19-4Q3LI73 84 aa4.65□□□□□ -1.67
CLK3-201ENST00000345005 MDN1Q9NU22 5596 aa4.62□□□□□ -1.67
CLK3-201ENST00000345005 LCE3CQ5T5A8 94 aa4.62□□□□□ -1.67
CLK3-201ENST00000345005 MT1EP04732 61 aa4.59□□□□□ -1.67
CLK3-201ENST00000345005 KRTAP5-9P26371 169 aa4.58□□□□□ -1.68
CLK3-201ENST00000345005 MT1LQ93083 61 aa4.52□□□□□ -1.69
CLK3-201ENST00000345005 SPRR2FQ96RM1 72 aa4.44□□□□□ -1.7
CLK3-201ENST00000345005 KRTAP20-1Q3LI63 56 aa4.42□□□□□ -1.7
CLK3-201ENST00000345005 KRTAP19-3Q7Z4W3 81 aa4.4□□□□□ -1.7
CLK3-201ENST00000345005 MT1GP13640 62 aa4.39□□□□□ -1.71
CLK3-201ENST00000345005 KRTAP2-3P0C7H8 128 aa4.38□□□□□ -1.71
CLK3-201ENST00000345005 KRTAP2-4Q9BYR9 128 aa4.38□□□□□ -1.71
CLK3-201ENST00000345005 KRTAP2-1Q9BYU5 128 aa4.38□□□□□ -1.71
CLK3-201ENST00000345005 KRTAP4-7Q9BYR0 210 aa4.37□□□□□ -1.71
CLK3-201ENST00000345005 SPRR2EP22531 72 aa4.35□□□□□ -1.71
CLK3-201ENST00000345005 SPRR2BP35325 72 aa4.35□□□□□ -1.71
CLK3-201ENST00000345005 SPRR2AP35326 72 aa4.35□□□□□ -1.71
CLK3-201ENST00000345005 KRTAP4-12Q9BQ66 201 aa4.34□□□□□ -1.71
CLK3-201ENST00000345005 LCE1AQ5T7P2 110 aa4.33□□□□□ -1.72
CLK3-201ENST00000345005 MT1MQ8N339 61 aa4.32□□□□□ -1.72
CLK3-201ENST00000345005 LCE5AQ5TCM9 118 aa4.31□□□□□ -1.72
CLK3-201ENST00000345005 KRTAP9-6A8MVA2 160 aa4.3□□□□□ -1.72
CLK3-201ENST00000345005 LCE4AQ5TA78 99 aa4.26□□□□□ -1.73
CLK3-201ENST00000345005 KRTAP4-3Q9BYR4 195 aa4.23□□□□□ -1.73
CLK3-201ENST00000345005 SPRR2DP22532 72 aa4.21□□□□□ -1.74
CLK3-201ENST00000345005 LCE3BQ5TA77 95 aa4.21□□□□□ -1.74
CLK3-201ENST00000345005 KRTAP2-2Q9BYT5 123 aa4.16□□□□□ -1.74
CLK3-201ENST00000345005 KRTAP9-9Q9BYP9 154 aa4.11□□□□□ -1.75
CLK3-201ENST00000345005 KRTAP9-4Q9BYQ2 154 aa4.11□□□□□ -1.75
CLK3-201ENST00000345005 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.77
CLK3-201ENST00000345005 LCE1DQ5T752 114 aa3.92□□□□□ -1.78
CLK3-201ENST00000345005 KRTAP12-4P60329 112 aa3.87□□□□□ -1.79
CLK3-201ENST00000345005 KRTAP5-5Q701N2 237 aaPredicted RBP3.87□□□□□ -1.79
CLK3-201ENST00000345005 KRTAP4-9Q9BYQ8 210 aa3.86□□□□□ -1.79
CLK3-201ENST00000345005 MT1AP04731 61 aa3.84□□□□□ -1.79
CLK3-201ENST00000345005 GPR98Q8WXG9 6306 aa3.81□□□□□ -1.8
CLK3-201ENST00000345005 KRTAP6-1Q3LI64 71 aa3.8□□□□□ -1.8
CLK3-201ENST00000345005 HMCN1Q96RW7 5635 aa3.77□□□□□ -1.81
CLK3-201ENST00000345005 KRTAP4-2Q9BYR5 136 aa3.77□□□□□ -1.81
CLK3-201ENST00000345005 KRTAP5-3Q6L8H2 238 aa3.74□□□□□ -1.81
CLK3-201ENST00000345005 MT4P47944 62 aa3.7□□□□□ -1.82
CLK3-201ENST00000345005 KRTAP4-11Q9BYQ6 195 aa3.7□□□□□ -1.82
CLK3-201ENST00000345005 KRTAP5-4Q6L8H1 288 aa3.68□□□□□ -1.82
CLK3-201ENST00000345005 AHNAK2Q8IVF2 5795 aa3.63□□□□□ -1.83
CLK3-201ENST00000345005 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
CLK3-201ENST00000345005 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
CLK3-201ENST00000345005 LCE3EQ5T5B0 92 aa3.58□□□□□ -1.84
CLK3-201ENST00000345005 MT3P25713 68 aa3.49□□□□□ -1.85
CLK3-201ENST00000345005 KRTAP6-2Q3LI66 62 aa3.49□□□□□ -1.85
CLK3-201ENST00000345005 KRTAP5-10Q6L8G5 202 aa3.49□□□□□ -1.85
CLK3-201ENST00000345005 KRTAP20-2Q3LI61 65 aa3.47□□□□□ -1.85
CLK3-201ENST00000345005 PRM1P04553 51 aa3.41□□□□□ -1.86
CLK3-201ENST00000345005 KRTAP5-2Q701N4 177 aa3.34□□□□□ -1.87
CLK3-201ENST00000345005 KRTAP5-7Q6L8G8 165 aa3.33□□□□□ -1.88
CLK3-201ENST00000345005 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
CLK3-201ENST00000345005 LCE1EQ5T753 118 aa3.09□□□□□ -1.92
CLK3-201ENST00000345005 KRTAP5-8O75690 187 aa3.07□□□□□ -1.92
CLK3-201ENST00000345005 MUC5BQ9HC84 5762 aaPredicted RBP3□□□□□ -1.93
CLK3-201ENST00000345005 AHNAKQ09666 5890 aaKnown RBP2.97□□□□□ -1.93
CLK3-201ENST00000345005 MUC5ACP98088 5654 aa2.96□□□□□ -1.94
CLK3-201ENST00000345005 KRTAP5-1Q6L8H4 278 aa2.91□□□□□ -1.94
CLK3-201ENST00000345005 LCE1FQ5T754 118 aa2.88□□□□□ -1.95
CLK3-201ENST00000345005 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
CLK3-201ENST00000345005 LCE1CQ5T751 118 aa2.8□□□□□ -1.96
CLK3-201ENST00000345005 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.67□□□□□ -1.98
CLK3-201ENST00000345005 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
CLK3-201ENST00000345005 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
CLK3-201ENST00000345005 KRTAP21-1Q3LI58 79 aa2.33□□□□□ -2.04
CLK3-201ENST00000345005 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
CLK3-201ENST00000345005 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
CLK3-201ENST00000345005 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
CLK3-201ENST00000345005 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 134.3 ms