RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PP632Q6XCG6 107 aa7.98□□□□□ -1.13
SDC3-202ENST00000339394 KRTAP19-3Q7Z4W3 81 aa7.98□□□□□ -1.13
SDC3-202ENST00000339394 KRTAP20-1Q3LI63 56 aa7.93□□□□□ -1.14
SDC3-202ENST00000339394 LCE5AQ5TCM9 118 aa7.93□□□□□ -1.14
SDC3-202ENST00000339394 MT1LQ93083 61 aa7.92□□□□□ -1.14
SDC3-202ENST00000339394 SPRR2DP22532 72 aa7.88□□□□□ -1.15
SDC3-202ENST00000339394 MT1GP13640 62 aa7.85□□□□□ -1.15
SDC3-202ENST00000339394 MT1MQ8N339 61 aa7.74□□□□□ -1.17
SDC3-202ENST00000339394 KRTAP15-1Q3LI76 137 aa7.73□□□□□ -1.17
SDC3-202ENST00000339394 KRTAP2-3P0C7H8 128 aa7.71□□□□□ -1.18
SDC3-202ENST00000339394 KRTAP2-4Q9BYR9 128 aa7.71□□□□□ -1.18
SDC3-202ENST00000339394 DSTQ03001 7570 aaKnown RBP7.65□□□□□ -1.19
SDC3-202ENST00000339394 LCE3BQ5TA77 95 aa7.63□□□□□ -1.19
SDC3-202ENST00000339394 KRTAP4-7Q9BYR0 210 aa7.6□□□□□ -1.19
SDC3-202ENST00000339394 KRTAP19-4Q3LI73 84 aa7.59□□□□□ -1.2
SDC3-202ENST00000339394 PRAC1Q96KF2 57 aa7.59□□□□□ -1.2
SDC3-202ENST00000339394 KRTAP4-3Q9BYR4 195 aa7.56□□□□□ -1.2
SDC3-202ENST00000339394 KRTAP2-2Q9BYT5 123 aa7.51□□□□□ -1.21
SDC3-202ENST00000339394 KRTAP2-1Q9BYU5 128 aa7.51□□□□□ -1.21
SDC3-202ENST00000339394 LCE3CQ5T5A8 94 aa7.47□□□□□ -1.21
SDC3-202ENST00000339394 KTN1-AS1Q86SY8 53 aa7.47□□□□□ -1.21
SDC3-202ENST00000339394 SVIPQ8NHG7 77 aa7.42□□□□□ -1.22
SDC3-202ENST00000339394 LOC100996750A0A140TA64 210 aa7.17□□□□□ -1.26
SDC3-202ENST00000339394 KRTAP9-6A8MVA2 160 aa7.06□□□□□ -1.28
SDC3-202ENST00000339394 KRTAP5-5Q701N2 237 aaPredicted RBP7.05□□□□□ -1.28
SDC3-202ENST00000339394 KRTAP5-4Q6L8H1 288 aa7.01□□□□□ -1.29
SDC3-202ENST00000339394 LCE4AQ5TA78 99 aa6.99□□□□□ -1.29
SDC3-202ENST00000339394 KRTAP4-9Q9BYQ8 210 aa6.96□□□□□ -1.29
SDC3-202ENST00000339394 MT4P47944 62 aa6.87□□□□□ -1.31
SDC3-202ENST00000339394 LCE1DQ5T752 114 aa6.86□□□□□ -1.31
SDC3-202ENST00000339394 SPRR5A0A1B0GTR4 108 aa6.82□□□□□ -1.32
SDC3-202ENST00000339394 GPR98Q8WXG9 6306 aa6.81□□□□□ -1.32
SDC3-202ENST00000339394 HMCN1Q96RW7 5635 aa6.78□□□□□ -1.32
SDC3-202ENST00000339394 KRTAP4-6Q9BYQ5 205 aa6.76□□□□□ -1.33
SDC3-202ENST00000339394 MT1AP04731 61 aa6.73□□□□□ -1.33
SDC3-202ENST00000339394 SYNE1Q8NF91 8797 aaKnown RBP6.71□□□□□ -1.33
SDC3-202ENST00000339394 KRTAP12-4P60329 112 aa6.69□□□□□ -1.34
SDC3-202ENST00000339394 KRTAP6-1Q3LI64 71 aa6.69□□□□□ -1.34
SDC3-202ENST00000339394 KRTAP20-2Q3LI61 65 aa6.57□□□□□ -1.36
SDC3-202ENST00000339394 KRTAP9-4Q9BYQ2 154 aa6.46□□□□□ -1.38
SDC3-202ENST00000339394 KRTAP5-3Q6L8H2 238 aa6.36□□□□□ -1.39
SDC3-202ENST00000339394 LUZP6Q538Z0 58 aa6.28□□□□□ -1.4
SDC3-202ENST00000339394 KRTAP6-2Q3LI66 62 aa6.27□□□□□ -1.41
SDC3-202ENST00000339394 AHNAK2Q8IVF2 5795 aa6.26□□□□□ -1.41
SDC3-202ENST00000339394 KRTAP5-2Q701N4 177 aa6.25□□□□□ -1.41
SDC3-202ENST00000339394 KRTAP5-10Q6L8G5 202 aa6.18□□□□□ -1.42
SDC3-202ENST00000339394 MT3P25713 68 aa6.14□□□□□ -1.43
SDC3-202ENST00000339394 KRTAP5-7Q6L8G8 165 aa6.01□□□□□ -1.45
SDC3-202ENST00000339394 OBSCNQ5VST9 7968 aa5.87□□□□□ -1.47
SDC3-202ENST00000339394 KRTAP4-11Q9BYQ6 195 aa5.86□□□□□ -1.47
SDC3-202ENST00000339394 NDUFAF8A1L188 74 aa5.76□□□□□ -1.49
SDC3-202ENST00000339394 KRTAP5-8O75690 187 aa5.64□□□□□ -1.51
SDC3-202ENST00000339394 LCE3DQ9BYE3 92 aa5.52□□□□□ -1.53
SDC3-202ENST00000339394 KRTAP5-1Q6L8H4 278 aa5.5□□□□□ -1.53
SDC3-202ENST00000339394 LCE1EQ5T753 118 aa5.48□□□□□ -1.53
SDC3-202ENST00000339394 MUC5ACP98088 5654 aa5.36□□□□□ -1.55
SDC3-202ENST00000339394 LCE3EQ5T5B0 92 aa5.29□□□□□ -1.56
SDC3-202ENST00000339394 AHNAKQ09666 5890 aaKnown RBP5.23□□□□□ -1.57
SDC3-202ENST00000339394 KRTAP9-9Q9BYP9 154 aa5.22□□□□□ -1.57
SDC3-202ENST00000339394 MUC5BQ9HC84 5762 aaPredicted RBP5.17□□□□□ -1.58
SDC3-202ENST00000339394 LCE1BQ5T7P3 118 aa5.13□□□□□ -1.59
SDC3-202ENST00000339394 KRTAP4-2Q9BYR5 136 aa5.13□□□□□ -1.59
SDC3-202ENST00000339394 LCE1CQ5T751 118 aa5.1□□□□□ -1.59
SDC3-202ENST00000339394 A0A0A0MQY5 61 aa5.08□□□□□ -1.6
SDC3-202ENST00000339394 H3BS24 57 aa5.06□□□□□ -1.6
SDC3-202ENST00000339394 INE1O15225 51 aa4.79□□□□□ -1.64
SDC3-202ENST00000339394 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.71□□□□□ -1.66
SDC3-202ENST00000339394 KRTAP5-11Q6L8G4 156 aa4.55□□□□□ -1.68
SDC3-202ENST00000339394 KRTAP4-12Q9BQ66 201 aa4.44□□□□□ -1.7
SDC3-202ENST00000339394 KRTAP21-2Q3LI59 83 aa4.4□□□□□ -1.71
SDC3-202ENST00000339394 PRM1P04553 51 aa4.33□□□□□ -1.72
SDC3-202ENST00000339394 LCE1FQ5T754 118 aa4.27□□□□□ -1.73
SDC3-202ENST00000339394 KRTAP4-4Q9BYR3 166 aa3.94□□□□□ -1.78
SDC3-202ENST00000339394 PHGR1C9JFL3 82 aa3.92□□□□□ -1.78
SDC3-202ENST00000339394 MUC19Q7Z5P9 8384 aa3.57□□□□□ -1.84
SDC3-202ENST00000339394 KRTAP21-1Q3LI58 79 aa2.79□□□□□ -1.96
SDC3-202ENST00000339394 MUC16Q8WXI7 14507 aa2.45□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 144.8 ms