RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 MUC12Q9UKN1 5478 aa5.32□□□□□ -1.56
CBX3-201ENST00000337620 SPRR2FQ96RM1 72 aa5.32□□□□□ -1.56
CBX3-201ENST00000337620 KRTAP5-9P26371 169 aa5.23□□□□□ -1.57
CBX3-201ENST00000337620 MT1LQ93083 61 aa5.23□□□□□ -1.57
CBX3-201ENST00000337620 MDN1Q9NU22 5596 aa5.19□□□□□ -1.58
CBX3-201ENST00000337620 KRTAP6-3Q3LI67 103 aa5.17□□□□□ -1.58
CBX3-201ENST00000337620 KRTAP19-3Q7Z4W3 81 aa5.15□□□□□ -1.59
CBX3-201ENST00000337620 LCE3CQ5T5A8 94 aa5.14□□□□□ -1.59
CBX3-201ENST00000337620 SPRR5A0A1B0GTR4 108 aa5.11□□□□□ -1.59
CBX3-201ENST00000337620 MT1GP13640 62 aa5.09□□□□□ -1.59
CBX3-201ENST00000337620 KRTAP19-4Q3LI73 84 aa5.09□□□□□ -1.59
CBX3-201ENST00000337620 KRTAP4-7Q9BYR0 210 aa5.09□□□□□ -1.59
CBX3-201ENST00000337620 LCE1AQ5T7P2 110 aa5.06□□□□□ -1.6
CBX3-201ENST00000337620 KRTAP9-7A8MTY7 169 aa5.06□□□□□ -1.6
CBX3-201ENST00000337620 SPRR2EP22531 72 aa5.06□□□□□ -1.6
CBX3-201ENST00000337620 SPRR2BP35325 72 aa5.06□□□□□ -1.6
CBX3-201ENST00000337620 SPRR2AP35326 72 aa5.06□□□□□ -1.6
CBX3-201ENST00000337620 LCE5AQ5TCM9 118 aa5.06□□□□□ -1.6
CBX3-201ENST00000337620 MT1MQ8N339 61 aa5.04□□□□□ -1.6
CBX3-201ENST00000337620 KRTAP4-3Q9BYR4 195 aa4.97□□□□□ -1.61
CBX3-201ENST00000337620 DSTQ03001 7570 aaKnown RBP4.91□□□□□ -1.62
CBX3-201ENST00000337620 SPRR2DP22532 72 aa4.87□□□□□ -1.63
CBX3-201ENST00000337620 NEBP20929 6669 aa4.87□□□□□ -1.63
CBX3-201ENST00000337620 KRTAP9-6A8MVA2 160 aa4.86□□□□□ -1.63
CBX3-201ENST00000337620 INE1O15225 51 aa4.84□□□□□ -1.64
CBX3-201ENST00000337620 LCE3BQ5TA77 95 aa4.79□□□□□ -1.64
CBX3-201ENST00000337620 KRTAP9-9Q9BYP9 154 aa4.72□□□□□ -1.65
CBX3-201ENST00000337620 KRTAP9-4Q9BYQ2 154 aa4.72□□□□□ -1.65
CBX3-201ENST00000337620 KRTAP4-12Q9BQ66 201 aa4.64□□□□□ -1.67
CBX3-201ENST00000337620 KRTAP2-3P0C7H8 128 aa4.54□□□□□ -1.68
CBX3-201ENST00000337620 KRTAP2-4Q9BYR9 128 aa4.54□□□□□ -1.68
CBX3-201ENST00000337620 KRTAP5-5Q701N2 237 aaPredicted RBP4.53□□□□□ -1.68
CBX3-201ENST00000337620 KRTAP20-1Q3LI63 56 aa4.48□□□□□ -1.69
CBX3-201ENST00000337620 LCE1DQ5T752 114 aa4.48□□□□□ -1.69
CBX3-201ENST00000337620 KRTAP2-2Q9BYT5 123 aa4.45□□□□□ -1.7
CBX3-201ENST00000337620 KRTAP2-1Q9BYU5 128 aa4.45□□□□□ -1.7
CBX3-201ENST00000337620 KRTAP4-2Q9BYR5 136 aa4.44□□□□□ -1.7
CBX3-201ENST00000337620 MT1AP04731 61 aa4.43□□□□□ -1.7
CBX3-201ENST00000337620 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
CBX3-201ENST00000337620 KRTAP4-9Q9BYQ8 210 aa4.42□□□□□ -1.7
CBX3-201ENST00000337620 SYNE1Q8NF91 8797 aaKnown RBP4.36□□□□□ -1.71
CBX3-201ENST00000337620 KRTAP5-3Q6L8H2 238 aa4.35□□□□□ -1.71
CBX3-201ENST00000337620 KRTAP5-4Q6L8H1 288 aa4.34□□□□□ -1.71
CBX3-201ENST00000337620 LCE4AQ5TA78 99 aa4.29□□□□□ -1.72
CBX3-201ENST00000337620 MT4P47944 62 aa4.25□□□□□ -1.73
CBX3-201ENST00000337620 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
CBX3-201ENST00000337620 KRTAP4-11Q9BYQ6 195 aa4.17□□□□□ -1.74
CBX3-201ENST00000337620 HMCN1Q96RW7 5635 aa4.16□□□□□ -1.74
CBX3-201ENST00000337620 KRTAP20-2Q3LI61 65 aa4.09□□□□□ -1.75
CBX3-201ENST00000337620 KRTAP6-2Q3LI66 62 aa4.09□□□□□ -1.76
CBX3-201ENST00000337620 MT3P25713 68 aa4.03□□□□□ -1.76
CBX3-201ENST00000337620 KRTAP5-2Q701N4 177 aa3.92□□□□□ -1.78
CBX3-201ENST00000337620 LCE3DQ9BYE3 92 aa3.86□□□□□ -1.79
CBX3-201ENST00000337620 OBSCNQ5VST9 7968 aa3.84□□□□□ -1.8
CBX3-201ENST00000337620 LCE3EQ5T5B0 92 aa3.74□□□□□ -1.81
CBX3-201ENST00000337620 AHNAK2Q8IVF2 5795 aa3.71□□□□□ -1.82
CBX3-201ENST00000337620 LCE1EQ5T753 118 aa3.49□□□□□ -1.85
CBX3-201ENST00000337620 KRTAP5-10Q6L8G5 202 aa3.46□□□□□ -1.86
CBX3-201ENST00000337620 KRTAP5-8O75690 187 aa3.42□□□□□ -1.86
CBX3-201ENST00000337620 KRTAP5-1Q6L8H4 278 aa3.42□□□□□ -1.86
CBX3-201ENST00000337620 GPR98Q8WXG9 6306 aa3.38□□□□□ -1.87
CBX3-201ENST00000337620 MUC5ACP98088 5654 aa3.35□□□□□ -1.87
CBX3-201ENST00000337620 LCE1BQ5T7P3 118 aa3.34□□□□□ -1.87
CBX3-201ENST00000337620 KRTAP5-7Q6L8G8 165 aa3.27□□□□□ -1.89
CBX3-201ENST00000337620 LCE1CQ5T751 118 aa3.26□□□□□ -1.89
CBX3-201ENST00000337620 PRM1P04553 51 aa3.24□□□□□ -1.89
CBX3-201ENST00000337620 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.15□□□□□ -1.91
CBX3-201ENST00000337620 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.93
CBX3-201ENST00000337620 KRTAP21-2Q3LI59 83 aa2.87□□□□□ -1.95
CBX3-201ENST00000337620 KRTAP5-11Q6L8G4 156 aa2.87□□□□□ -1.95
CBX3-201ENST00000337620 AHNAKQ09666 5890 aaKnown RBP2.83□□□□□ -1.96
CBX3-201ENST00000337620 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
CBX3-201ENST00000337620 LCE1FQ5T754 118 aa2.6□□□□□ -1.99
CBX3-201ENST00000337620 PHGR1C9JFL3 82 aa2.48□□□□□ -2.01
CBX3-201ENST00000337620 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
CBX3-201ENST00000337620 KRTAP21-1Q3LI58 79 aa2.17□□□□□ -2.06
CBX3-201ENST00000337620 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 5.5 ms